logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Gene Cluster: MGYG000001523_13|CGC13

You are here: cgc->  ?help

CGC gene composition diagram | Gene composition table | Substrate predicted by eCAMI subfamily  |  Substrate predicted by dbCAN-PUL search  |  Genomic context 

CGC gene composition diagram

Created with SnapCAZymeTCSTPTF576999579217581435583653585871588089590307592525594743596961

Gene composition table

Protein IDProtein NameTypeStartEndStrandSignature
MGYG000001523_03045
hypothetical protein
CAZyme 576999 578567 - GH78
MGYG000001523_03046
hypothetical protein
CAZyme 578590 580608 - GH78
MGYG000001523_03047
hypothetical protein
CAZyme 580764 584906 - GH3| CBM6
MGYG000001523_03048
hypothetical protein
CAZyme 585085 587730 - CBM67| GH78
MGYG000001523_03049
L-arabinose transport system permease protein AraQ
TC 587754 588617 - 3.A.1.1.42
MGYG000001523_03050
L-arabinose transport system permease protein AraP
TC 588617 589477 - 3.A.1.1.7
MGYG000001523_03051
hypothetical protein
STP 589565 590917 - SBP_bac_1
MGYG000001523_03052
HTH-type transcriptional activator RhaR
TF 591026 592519 - HTH_AraC+HTH_AraC
MGYG000001523_03053
hypothetical protein
TC 592534 594321 - 8.A.59.2.1
MGYG000001523_03054
Autoinducer 2-binding protein LsrB
TC 594533 595621 - 3.A.1.2.9
Protein IDProtein NameTypeStartEndStrandSignature
Showing 1 to 10 of 13 entries

Substrate predicted by eCAMI subfamilies is alpha-rhamnoside

Substrate predicted by dbCAN-PUL is pectin download this fig


Genomic location

2,039 Pageviews
Mar. 05th - Apr. 05th