dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03956
Location and strand information: 13751 - 15199 (+)
Family: 1.I.1.1.3
Protein type: TC
Protein description: ATP-dependent RNA helicase RhlE

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03957
Location and strand information: 15407 - 17011 (+)
Family: HisKA+HATPase_c
Protein type: STP
Protein description: Sensor histidine kinase RcsC

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03958
Location and strand information: 17051 - 17908 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03959
Location and strand information: 17997 - 21359 (-)
Family: GH2
Protein type: CAZyme
Protein description: Evolved beta-galactosidase subunit alpha
Protein isoelectric point: 7.0086
Protein molecular weight: 128370.42
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03960
Location and strand information: 21356 - 23257 (-)
Family: PL33_1|PL0
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.6078
Protein molecular weight: 73275.72
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03961
Location and strand information: 23290 - 24672 (-)
Family: GH109
Protein type: CAZyme
Protein description: Glycosyl hydrolase family 109 protein 1
Protein isoelectric point: 5.5826
Protein molecular weight: 51724.27
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03962
Location and strand information: 24687 - 26126 (-)
Family: GH29
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.7224
Protein molecular weight: 55951.31
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03963
Location and strand information: 26123 - 29428 (-)
Family: GH105|GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 6.7678
Protein molecular weight: 124641.51
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03964
Location and strand information: 29479 - 29916 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03965
Location and strand information: 29758 - 33804 (-)
Family: HTH_AraC
Protein type: TF
Protein description: Sensor histidine kinase RcsC

Gene clsuter ID: MGYG000001780_39|CGC1
Gene ID: MGYG000001780_03966
Location and strand information: 34143 - 37442 (+)
Family: 1.B.14.6.1
Protein type: TC
Protein description: hypothetical protein

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CGC gene composition diagram

Gene composition table

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000001780_03956	ATP-dependent RNA helicase RhlE	TC	13751	15199	+	1.I.1.1.3
MGYG000001780_03957	Sensor histidine kinase RcsC	STP	15407	17011	+	HisKA\| HATPase_c
MGYG000001780_03958	hypothetical protein	null	17051	17908	+	Lactamase_B
MGYG000001780_03959	Evolved beta-galactosidase subunit alpha	CAZyme	17997	21359	-	GH2
MGYG000001780_03960	hypothetical protein	CAZyme	21356	23257	-	PL33_1\| PL0
MGYG000001780_03961	Glycosyl hydrolase family 109 protein 1	CAZyme	23290	24672	-	GH109
MGYG000001780_03962	hypothetical protein	CAZyme	24687	26126	-	GH29
MGYG000001780_03963	Beta-galactosidase	CAZyme	26123	29428	-	GH105\| GH2
MGYG000001780_03964	hypothetical protein	null	29479	29916	+	No domain
MGYG000001780_03965	Sensor histidine kinase RcsC	TF	29758	33804	-	HTH_AraC
MGYG000001780_03966	hypothetical protein	TC	34143	37442	+	1.B.14.6.1
Protein ID	Protein Name	Type	Start	End	Strand	Signature