dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02848
Location and strand information: 8455 - 10188 (-)
Family: 3.A.1.21.1
Protein type: TC
Protein description: Lipid A export ATP-binding/permease protein MsbA

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02849
Location and strand information: 10181 - 11944 (-)
Family: 3.A.1.21.1
Protein type: TC
Protein description: Iron import ATP-binding/permease protein IrtA

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02850
Location and strand information: 12080 - 12709 (-)
Family: TetR_N
Protein type: STP
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02851
Location and strand information: 12938 - 15370 (-)
Family: GH2
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.8389
Protein molecular weight: 93917.74
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02852
Location and strand information: 15407 - 17767 (-)
Family: GH3
Protein type: CAZyme
Protein description: Exo-alpha-(1->6)-L-arabinopyranosidase
Protein isoelectric point: 5.0287
Protein molecular weight: 85259.74
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02853
Location and strand information: 17770 - 20886 (-)
Family: GH38
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.0515
Protein molecular weight: 120637.73
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02854
Location and strand information: 21012 - 22436 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02855
Location and strand information: 22590 - 23516 (-)
Family: 3.A.1.1.29
Protein type: TC
Protein description: L-arabinose transport system permease protein AraQ

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02856
Location and strand information: 23529 - 24485 (-)
Family: 3.A.1.1.25
Protein type: TC
Protein description: putative multiple-sugar transport system permease YteP

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02857
Location and strand information: 24475 - 25482 (-)
Family: LacI
Protein type: TF
Protein description: Catabolite control protein A

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02858
Location and strand information: 25916 - 28180 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase BoGH2A
Protein isoelectric point: 4.9178
Protein molecular weight: 85068.43
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02859
Location and strand information: 28499 - 29104 (+)
Family: null
Protein type: null
Protein description: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02860
Location and strand information: 29284 - 30198 (-)
Family: null
Protein type: null
Protein description: 4-hydroxy-tetrahydrodipicolinate synthase

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02861
Location and strand information: 30245 - 31162 (-)
Family: 8.A.5.1.7
Protein type: TC
Protein description: Oxidoreductase YdhF

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02862
Location and strand information: 31223 - 32143 (-)
Family: null
Protein type: null
Protein description: N-acetylneuraminate lyase

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02863
Location and strand information: 32199 - 33026 (-)
Family: 3.A.1.1.39
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001988_31|CGC1
Gene ID: MGYG000001988_02864
Location and strand information: 33030 - 33950 (-)
Family: 3.A.1.1.20
Protein type: TC
Protein description: Lactose transport system permease protein LacF

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CGC gene composition diagram

Gene composition table

Substrate predicted by dbCAN-PUL is human milk oligosaccharide download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000001988_02848	Lipid A export ATP-binding/permease protein MsbA	TC	8455	10188	-	3.A.1.21.1
MGYG000001988_02849	Iron import ATP-binding/permease protein IrtA	TC	10181	11944	-	3.A.1.21.1
MGYG000001988_02850	hypothetical protein	STP	12080	12709	-	TetR_N
MGYG000001988_02851	hypothetical protein	CAZyme	12938	15370	-	GH2
MGYG000001988_02852	Exo-alpha-(1->6)-L-arabinopyranosidase	CAZyme	15407	17767	-	GH3
MGYG000001988_02853	hypothetical protein	CAZyme	17770	20886	-	GH38
MGYG000001988_02854	hypothetical protein	null	21012	22436	-	DUF3502
MGYG000001988_02855	L-arabinose transport system permease protein AraQ	TC	22590	23516	-	3.A.1.1.29
MGYG000001988_02856	putative multiple-sugar transport system permease YteP	TC	23529	24485	-	3.A.1.1.25
MGYG000001988_02857	Catabolite control protein A	TF	24475	25482	-	LacI
MGYG000001988_02858	Beta-galactosidase BoGH2A	CAZyme	25916	28180	-	GH2
MGYG000001988_02859	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	null	28499	29104	+	Abhydrolase_6
MGYG000001988_02860	4-hydroxy-tetrahydrodipicolinate synthase	null	29284	30198	-	DHDPS
MGYG000001988_02861	Oxidoreductase YdhF	TC	30245	31162	-	8.A.5.1.7
MGYG000001988_02862	N-acetylneuraminate lyase	null	31223	32143	-	DHDPS
MGYG000001988_02863	hypothetical protein	TC	32199	33026	-	3.A.1.1.39
MGYG000001988_02864	Lactose transport system permease protein LacF	TC	33030	33950	-	3.A.1.1.20
Protein ID	Protein Name	Type	Start	End	Strand	Signature