dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00171
Location and strand information: 257988 - 259403 (-)
Family: GH105
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.7331
Protein molecular weight: 53271.99
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00172
Location and strand information: 259416 - 261323 (-)
Family: CBM2|PL11_1|PL11|CBM35
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 5.4193
Protein molecular weight: 70610.68
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00173
Location and strand information: 261320 - 262708 (-)
Family: GH28
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.4362
Protein molecular weight: 52077.86
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00174
Location and strand information: 262772 - 265123 (-)
Family: GH115
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.5456
Protein molecular weight: 89715.65
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00175
Location and strand information: 265397 - 267514 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00176
Location and strand information: 267571 - 269811 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00177
Location and strand information: 269820 - 271328 (-)
Family: PL10_2
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.9815
Protein molecular weight: 57133.36
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00178
Location and strand information: 271421 - 273298 (-)
Family: 8.A.46.1.3
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00179
Location and strand information: 273317 - 276856 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00180
Location and strand information: 276974 - 277993 (-)
Family: FecR
Protein type: STP
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00181
Location and strand information: 278130 - 278711 (+)
Family: GerE
Protein type: TF
Protein description: ECF RNA polymerase sigma-E factor

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00182
Location and strand information: 279915 - 283211 (-)
Family: PL26
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.5497
Protein molecular weight: 124914
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00183
Location and strand information: 283233 - 284876 (-)
Family: CE12
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 9.8118
Protein molecular weight: 60966.94
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00184
Location and strand information: 285024 - 286850 (-)
Family: CBM2|PL11_1|PL11|CBM35
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 4.5412
Protein molecular weight: 66977.34
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00185
Location and strand information: 286991 - 289996 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 6.5217
Protein molecular weight: 114617.42
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00186
Location and strand information: 290202 - 293057 (-)
Family: GH106
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.1129
Protein molecular weight: 106468.23
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00187
Location and strand information: 293071 - 294465 (-)
Family: null
Protein type: null
Protein description: Arylsulfatase

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00188
Location and strand information: 294475 - 295800 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00189
Location and strand information: 295894 - 296871 (-)
Family: CE0|CE4
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.3897
Protein molecular weight: 37261.71
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00190
Location and strand information: 297129 - 299441 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00191
Location and strand information: 299465 - 302830 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00192
Location and strand information: 303201 - 304382 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00193
Location and strand information: 304671 - 307853 (+)
Family: 1.B.14.6.1
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00194
Location and strand information: 307872 - 309848 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002478_1|CGC8
Gene ID: MGYG000002478_00195
Location and strand information: 309889 - 312738 (+)
Family: 1.B.14.6.1
Protein type: TC
Protein description: hypothetical protein

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000002478_00171	GH105_e35\|3.2.1.172	pectin
MGYG000002478_00172	PL11_e0\|CBM35_e56\|CBM2_e72\|4.2.2.23	pectin
MGYG000002478_00173	GH28_e36\|3.2.1.67\|3.2.1.-	pectin
MGYG000002478_00174	GH115_e1\|3.2.1.-	arabinogalactan
MGYG000002478_00177
MGYG000002478_00182	PL26_e0
MGYG000002478_00183	CE12_e40
MGYG000002478_00184	PL11_e0\|CBM35_e56\|CBM2_e72\|4.2.2.23	pectin
MGYG000002478_00185	GH2_e11\|3.2.1.31	beta-glucuronan
MGYG000002478_00186	GH106_e14
MGYG000002478_00189	CE4_e36

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000002478_00171	hypothetical protein	CAZyme	257988	259403	-	GH105
MGYG000002478_00172	Rhamnogalacturonan endolyase YesW	CAZyme	259416	261323	-	CBM2\| PL11_1\| PL11\| CBM35
MGYG000002478_00173	hypothetical protein	CAZyme	261320	262708	-	GH28
MGYG000002478_00174	hypothetical protein	CAZyme	262772	265123	-	GH115
MGYG000002478_00175	hypothetical protein	null	265397	267514	-	No domain
MGYG000002478_00176	hypothetical protein	null	267571	269811	-	No domain
MGYG000002478_00177	hypothetical protein	CAZyme	269820	271328	-	PL10_2
MGYG000002478_00178	hypothetical protein	TC	271421	273298	-	8.A.46.1.3
MGYG000002478_00179	TonB-dependent receptor SusC	TC	273317	276856	-	1.B.14.6.1
MGYG000002478_00180	hypothetical protein	STP	276974	277993	-	FecR
MGYG000002478_00181	ECF RNA polymerase sigma-E factor	TF	278130	278711	+	GerE
MGYG000002478_00182	hypothetical protein	CAZyme	279915	283211	-	PL26
MGYG000002478_00183	hypothetical protein	CAZyme	283233	284876	-	CE12
MGYG000002478_00184	Rhamnogalacturonan endolyase YesW	CAZyme	285024	286850	-	CBM2\| PL11_1\| PL11\| CBM35
MGYG000002478_00185	Beta-galactosidase	CAZyme	286991	289996	-	GH2
MGYG000002478_00186	hypothetical protein	CAZyme	290202	293057	-	GH106
MGYG000002478_00187	Arylsulfatase	null	293071	294465	-	Sulfatase\| DUF4976
MGYG000002478_00188	hypothetical protein	null	294475	295800	-	PD40\| PD40
MGYG000002478_00189	hypothetical protein	CAZyme	295894	296871	-	CE0\| CE4
MGYG000002478_00190	hypothetical protein	null	297129	299441	-	SusD-like_3\| SusD_RagB
MGYG000002478_00191	TonB-dependent receptor SusC	TC	299465	302830	-	1.B.14.6.1
MGYG000002478_00192	hypothetical protein	null	303201	304382	-	Arm-DNA-bind_5\| Phage_int_SAM_5
MGYG000002478_00193	hypothetical protein	TC	304671	307853	+	1.B.14.6.1
MGYG000002478_00194	hypothetical protein	null	307872	309848	+	SusD-like_3\| SusD_RagB
MGYG000002478_00195	hypothetical protein	TC	309889	312738	+	1.B.14.6.1
Protein ID	Protein Name	Type	Start	End	Strand	Signature