dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01870
Location and strand information: 139000 - 140403 (-)
Family: GH105
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.5007
Protein molecular weight: 52556.96
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01871
Location and strand information: 140414 - 142321 (-)
Family: CBM35|CBM2|PL11|PL11_1|CBM13
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 5.8501
Protein molecular weight: 70267.53
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01872
Location and strand information: 142429 - 143811 (-)
Family: GH28
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.7246
Protein molecular weight: 52017.65
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01873
Location and strand information: 143833 - 146178 (-)
Family: GH115
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.8078
Protein molecular weight: 88977.18
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01874
Location and strand information: 146373 - 147854 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01875
Location and strand information: 147866 - 151192 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01876
Location and strand information: 151423 - 152436 (-)
Family: FecR
Protein type: STP
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01877
Location and strand information: 152573 - 153154 (+)
Family: GerE
Protein type: TF
Protein description: ECF RNA polymerase sigma-E factor

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01878
Location and strand information: 153232 - 156540 (-)
Family: PL26
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.4443
Protein molecular weight: 125344.46
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01879
Location and strand information: 156818 - 158467 (-)
Family: CE12
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 9.3547
Protein molecular weight: 61449.39
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01880
Location and strand information: 158785 - 160629 (-)
Family: CBM35|PL11_1|CBM2|PL11
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 4.8256
Protein molecular weight: 68000.98
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01881
Location and strand information: 160714 - 163719 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 6.5195
Protein molecular weight: 114386.82
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01882
Location and strand information: 164304 - 167165 (-)
Family: GH106
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.7079
Protein molecular weight: 107446.17
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01883
Location and strand information: 167178 - 168572 (-)
Family: null
Protein type: null
Protein description: Arylsulfatase

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01884
Location and strand information: 168590 - 170425 (-)
Family: PL11
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 5.045
Protein molecular weight: 68308.7
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01885
Location and strand information: 170455 - 171735 (-)
Family: CE15
Protein type: CAZyme
Protein description: Carbohydrate esterase
Protein isoelectric point: 6.8802
Protein molecular weight: 48148.57
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01886
Location and strand information: 171740 - 173068 (-)
Family: null
Protein type: null
Protein description: Oligogalacturonate lyase

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01887
Location and strand information: 173245 - 175587 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002560_8|CGC3
Gene ID: MGYG000002560_01888
Location and strand information: 175611 - 178994 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000002560_01870	GH105_e35\|3.2.1.172	pectin
MGYG000002560_01871	PL11_e0\|CBM35_e56\|CBM2_e72\|CBM13_e93\|4.2.2.23	pectin
MGYG000002560_01872	GH28_e36\|3.2.1.67\|3.2.1.-	pectin
MGYG000002560_01873	GH115_e1\|3.2.1.-	arabinogalactan
MGYG000002560_01878	PL26_e0
MGYG000002560_01879	CE12_e40
MGYG000002560_01880	PL11_e0\|CBM35_e56\|CBM2_e72\|4.2.2.23	pectin
MGYG000002560_01881	GH2_e11\|3.2.1.31	beta-glucuronan
MGYG000002560_01882	GH106_e14
MGYG000002560_01884	PL11_e1
MGYG000002560_01885

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000002560_01870	hypothetical protein	CAZyme	139000	140403	-	GH105
MGYG000002560_01871	Rhamnogalacturonan endolyase YesW	CAZyme	140414	142321	-	CBM35\| CBM2\| PL11\| PL11_1\| CBM13
MGYG000002560_01872	hypothetical protein	CAZyme	142429	143811	-	GH28
MGYG000002560_01873	hypothetical protein	CAZyme	143833	146178	-	GH115
MGYG000002560_01874	hypothetical protein	null	146373	147854	-	SusD-like_3\| SusD_RagB
MGYG000002560_01875	TonB-dependent receptor SusC	TC	147866	151192	-	1.B.14.6.1
MGYG000002560_01876	hypothetical protein	STP	151423	152436	-	FecR
MGYG000002560_01877	ECF RNA polymerase sigma-E factor	TF	152573	153154	+	GerE
MGYG000002560_01878	hypothetical protein	CAZyme	153232	156540	-	PL26
MGYG000002560_01879	hypothetical protein	CAZyme	156818	158467	-	CE12
MGYG000002560_01880	Rhamnogalacturonan endolyase YesW	CAZyme	158785	160629	-	CBM35\| PL11_1\| CBM2\| PL11
MGYG000002560_01881	Beta-galactosidase	CAZyme	160714	163719	-	GH2
MGYG000002560_01882	hypothetical protein	CAZyme	164304	167165	-	GH106
MGYG000002560_01883	Arylsulfatase	null	167178	168572	-	Sulfatase\| DUF4976
MGYG000002560_01884	Rhamnogalacturonan endolyase YesW	CAZyme	168590	170425	-	PL11
MGYG000002560_01885	Carbohydrate esterase	CAZyme	170455	171735	-	CE15
MGYG000002560_01886	Oligogalacturonate lyase	null	171740	173068	-	PD40\| Pectate_lyase22
MGYG000002560_01887	hypothetical protein	null	173245	175587	-	SusD-like_3\| SusD_RagB
MGYG000002560_01888	TonB-dependent receptor SusC	TC	175611	178994	-	1.B.14.6.1
Protein ID	Protein Name	Type	Start	End	Strand	Signature