dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01876
Location and strand information: 1370 - 2680 (+)
Family: PL1_6
Protein type: CAZyme
Protein description: Pectate lyase
Protein isoelectric point: 8.3147
Protein molecular weight: 48277.46
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01877
Location and strand information: 2865 - 3863 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01878
Location and strand information: 4031 - 5020 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01879
Location and strand information: 5214 - 6569 (+)
Family: GH28
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.0587
Protein molecular weight: 48967.48
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01880
Location and strand information: 6735 - 7508 (+)
Family: 3.A.1.3.27
Protein type: TC
Protein description: Membrane-bound lytic murein transglycosylase F

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01881
Location and strand information: 7826 - 8449 (+)
Family: 3.A.1.3.15
Protein type: TC
Protein description: Arginine transport system permease protein ArtQ

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01882
Location and strand information: 8498 - 9220 (+)
Family: 3.A.1.3.25
Protein type: TC
Protein description: Arginine transport ATP-binding protein ArtM

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01883
Location and strand information: 9346 - 10245 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01884
Location and strand information: 10245 - 11174 (+)
Family: 3.A.1.32.2
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003575_252|CGC1
Gene ID: MGYG000003575_01885
Location and strand information: 11255 - 13159 (+)
Family: 3.A.1.32.2
Protein type: TC
Protein description: Vitamin B12 import ATP-binding protein BtuD

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CGC gene composition diagram

Gene composition table

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000003575_01876	Pectate lyase	CAZyme	1370	2680	+	PL1_6
MGYG000003575_01877	hypothetical protein	null	2865	3863	+	Hydrolase_4
MGYG000003575_01878	hypothetical protein	null	4031	5020	+	Pectinesterase
MGYG000003575_01879	hypothetical protein	CAZyme	5214	6569	+	GH28
MGYG000003575_01880	Membrane-bound lytic murein transglycosylase F	TC	6735	7508	+	3.A.1.3.27
MGYG000003575_01881	Arginine transport system permease protein ArtQ	TC	7826	8449	+	3.A.1.3.15
MGYG000003575_01882	Arginine transport ATP-binding protein ArtM	TC	8498	9220	+	3.A.1.3.25
MGYG000003575_01883	hypothetical protein	null	9346	10245	+	PAP2
MGYG000003575_01884	hypothetical protein	TC	10245	11174	+	3.A.1.32.2
MGYG000003575_01885	Vitamin B12 import ATP-binding protein BtuD	TC	11255	13159	+	3.A.1.32.2
Protein ID	Protein Name	Type	Start	End	Strand	Signature