dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00045
Location and strand information: 63265 - 66438 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00046
Location and strand information: 66620 - 69655 (-)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional activator RhaS

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00047
Location and strand information: 69658 - 72249 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.5061
Protein molecular weight: 97835.68
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00048
Location and strand information: 72271 - 73695 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00049
Location and strand information: 73751 - 76894 (-)
Family: GH106
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.9226
Protein molecular weight: 117572.87
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00050
Location and strand information: 76970 - 79804 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.2757
Protein molecular weight: 106965.61
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00051
Location and strand information: 80002 - 83253 (-)
Family: GH2|CBM67
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.5012
Protein molecular weight: 122948.74
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00052
Location and strand information: 83279 - 87265 (-)
Family: GH137|GH2|CBM57
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 8.5631
Protein molecular weight: 150775.2
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00053
Location and strand information: 87710 - 90424 (-)
Family: GH138
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.7345
Protein molecular weight: 102413.24
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00054
Location and strand information: 90421 - 90546 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00055
Location and strand information: 90574 - 94542 (-)
Family: CBM67|GH33|GH78
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.6386
Protein molecular weight: 148966.11
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00056
Location and strand information: 94600 - 96060 (-)
Family: GH140
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.2649
Protein molecular weight: 55579.84
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00057
Location and strand information: 96116 - 98596 (-)
Family: CBM13|CBM2|GH95
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.1047
Protein molecular weight: 92935.05
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00058
Location and strand information: 98733 - 100049 (-)
Family: CE0|CE19
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.6525
Protein molecular weight: 49893.54
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00059
Location and strand information: 100000 - 102513 (-)
Family: CBM67|GH78
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.4817
Protein molecular weight: 94277.31
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00060
Location and strand information: 102532 - 106959 (-)
Family: GH43_18|GH143|GH142
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.3584
Protein molecular weight: 168853.96
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00061
Location and strand information: 106998 - 109094 (+)
Family: null
Protein type: null
Protein description: ATP-dependent DNA helicase RecG

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00062
Location and strand information: 109699 - 110031 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004456_1|CGC4
Gene ID: MGYG000004456_00063
Location and strand information: 110275 - 111204 (+)
Family: CBM50
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 9.5733
Protein molecular weight: 34509.15
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000004456_00047	GH2_e53
MGYG000004456_00049	GH106_e13\|3.2.1.40	pectin
MGYG000004456_00050	GH2_e77\|3.2.1.-	pectin
MGYG000004456_00051	GH2_e4\|CBM67_e8\|3.2.1.23	beta-galactan
MGYG000004456_00052	GH2_e49\|GH137_e0\|CBM57_e1\|3.2.1.31\|3.2.1.185	pectin\|beta-glucuronan
MGYG000004456_00053	GH138_e0\|3.2.1.-
MGYG000004456_00055	GH78_e32\|GH33_e8\|CBM67_e6\|3.2.1.40\|3.2.1.-	pectin\|alpha-rhamnoside
MGYG000004456_00056	GH140_e1\|3.2.1.-	pectin
MGYG000004456_00057	GH95_e0\|CBM2_e92\|CBM13_e181\|3.2.1.-	xylan\|pectin
MGYG000004456_00058	CE0_e11
MGYG000004456_00059	GH78_e41\|3.2.1.40	alpha-rhamnoside
MGYG000004456_00060	GH143_e0\|GH142_e0
MGYG000004456_00063	CBM50_e70

You are here: cgc-> ?help

CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000004456_00045	hypothetical protein	TC	63265	66438	-	1.B.14.6.1
MGYG000004456_00046	HTH-type transcriptional activator RhaS	TF	66620	69655	-	HTH_AraC+HTH_AraC
MGYG000004456_00047	Beta-galactosidase	CAZyme	69658	72249	-	GH2
MGYG000004456_00048	hypothetical protein	null	72271	73695	-	SASA
MGYG000004456_00049	hypothetical protein	CAZyme	73751	76894	-	GH106
MGYG000004456_00050	Beta-galactosidase	CAZyme	76970	79804	-	GH2
MGYG000004456_00051	Beta-galactosidase	CAZyme	80002	83253	-	GH2\| CBM67
MGYG000004456_00052	Beta-galactosidase	CAZyme	83279	87265	-	GH137\| GH2\| CBM57
MGYG000004456_00053	hypothetical protein	CAZyme	87710	90424	-	GH138
MGYG000004456_00054	hypothetical protein	null	90421	90546	-	No domain
MGYG000004456_00055	hypothetical protein	CAZyme	90574	94542	-	CBM67\| GH33\| GH78
MGYG000004456_00056	hypothetical protein	CAZyme	94600	96060	-	GH140
MGYG000004456_00057	hypothetical protein	CAZyme	96116	98596	-	CBM13\| CBM2\| GH95
MGYG000004456_00058	hypothetical protein	CAZyme	98733	100049	-	CE0\| CE19
MGYG000004456_00059	hypothetical protein	CAZyme	100000	102513	-	CBM67\| GH78
MGYG000004456_00060	hypothetical protein	CAZyme	102532	106959	-	GH43_18\| GH143\| GH142
MGYG000004456_00061	ATP-dependent DNA helicase RecG	null	106998	109094	+	RecG_wedge\| DEAD\| Helicase_C\| RecG_dom3_C
MGYG000004456_00062	hypothetical protein	null	109699	110031	+	No domain
MGYG000004456_00063	hypothetical protein	CAZyme	110275	111204	+	CBM50
Protein ID	Protein Name	Type	Start	End	Strand	Signature