dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00282
Location and strand information: 602 - 2173 (+)
Family: 3.A.1.26.1
Protein type: TC
Protein description: Putative HMP/thiamine import ATP-binding protein YkoD

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00283
Location and strand information: 2166 - 2924 (+)
Family: 3.A.1.25.4
Protein type: TC
Protein description: Energy-coupling factor transporter transmembrane protein EcfT

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00284
Location and strand information: 2999 - 3796 (+)
Family: null
Protein type: null
Protein description: tRNA pseudouridine synthase A

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00285
Location and strand information: 3831 - 4736 (+)
Family: 2.A.119.2.2
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00286
Location and strand information: 4770 - 5555 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00287
Location and strand information: 5716 - 6780 (+)
Family: GT2
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.9378
Protein molecular weight: 38472.49
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00288
Location and strand information: 6817 - 9153 (+)
Family: null
Protein type: null
Protein description: Choline trimethylamine-lyase

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00289
Location and strand information: 9177 - 10028 (+)
Family: null
Protein type: null
Protein description: Benzylsuccinate synthase activating enzyme

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00290
Location and strand information: 10123 - 11241 (-)
Family: GT2
Protein type: CAZyme
Protein description: Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
Protein isoelectric point: 6.2595
Protein molecular weight: 40744.12
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004617_18|CGC1
Gene ID: MGYG000004617_00291
Location and strand information: 11334 - 12326 (+)
Family: GT2
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.3951
Protein molecular weight: 37519.59
NCBI Blastp with this gene.
Protein sequence: copy AA seq

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CGC gene composition diagram

Gene composition table

Substrate predicted by dbCAN-PUL is capsule polysaccharide synthesis download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000004617_00282	Putative HMP/thiamine import ATP-binding protein YkoD	TC	602	2173	+	3.A.1.26.1
MGYG000004617_00283	Energy-coupling factor transporter transmembrane protein EcfT	TC	2166	2924	+	3.A.1.25.4
MGYG000004617_00284	tRNA pseudouridine synthase A	null	2999	3796	+	PseudoU_synth_1
MGYG000004617_00285	hypothetical protein	TC	3831	4736	+	2.A.119.2.2
MGYG000004617_00286	hypothetical protein	null	4770	5555	+	No domain
MGYG000004617_00287	hypothetical protein	CAZyme	5716	6780	+	GT2
MGYG000004617_00288	Choline trimethylamine-lyase	null	6817	9153	+	PFL-like\| Gly_radical
MGYG000004617_00289	Benzylsuccinate synthase activating enzyme	null	9177	10028	+	Fer4_12\| Radical_SAM
MGYG000004617_00290	Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	CAZyme	10123	11241	-	GT2
MGYG000004617_00291	hypothetical protein	CAZyme	11334	12326	+	GT2
Protein ID	Protein Name	Type	Start	End	Strand	Signature