dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_02993
Location and strand information: 83 - 3073 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.0255
Protein molecular weight: 114225.19
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_02994
Location and strand information: 3090 - 4667 (-)
Family: null
Protein type: null
Protein description: SusD-like protein

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_02995
Location and strand information: 4682 - 7783 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_02996
Location and strand information: 8032 - 8940 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_02997
Location and strand information: 9098 - 9874 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_02998
Location and strand information: 9903 - 11183 (-)
Family: CE12
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.9249
Protein molecular weight: 48245.78
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_02999
Location and strand information: 11194 - 12870 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03000
Location and strand information: 13118 - 15031 (+)
Family: PL11|CBM35|PL11_1
Protein type: CAZyme
Protein description: Rhamnogalacturonan endolyase YesW
Protein isoelectric point: 6.2806
Protein molecular weight: 71628.37
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03001
Location and strand information: 15044 - 16615 (+)
Family: PL9|PL9_1
Protein type: CAZyme
Protein description: Pectate lyase L
Protein isoelectric point: 5.1891
Protein molecular weight: 57149.01
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03002
Location and strand information: 16643 - 17056 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03003
Location and strand information: 17091 - 21413 (-)
Family: HTH_AraC
Protein type: TF
Protein description: Sensor histidine kinase RcsC

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03004
Location and strand information: 21499 - 22458 (-)
Family: CE0|CE4
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 9.8203
Protein molecular weight: 36816.44
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03005
Location and strand information: 22554 - 25805 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03006
Location and strand information: 25985 - 28096 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03007
Location and strand information: 28277 - 31135 (-)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 7.3582
Protein molecular weight: 107188.66
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03008
Location and strand information: 31242 - 32618 (-)
Family: PL1|PL1_2
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.1301
Protein molecular weight: 49703.67
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03009
Location and strand information: 32737 - 34731 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03010
Location and strand information: 34745 - 37987 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03011
Location and strand information: 38229 - 39155 (-)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional activator RhaS

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03012
Location and strand information: 39301 - 40626 (-)
Family: GH105
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.2134
Protein molecular weight: 50525.98
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03013
Location and strand information: 40648 - 41793 (-)
Family: null
Protein type: null
Protein description: Lactaldehyde reductase

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03014
Location and strand information: 41818 - 42627 (-)
Family: null
Protein type: null
Protein description: Rhamnulose-1-phosphate aldolase

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03015
Location and strand information: 42677 - 43708 (-)
Family: 2.A.7.6.1
Protein type: TC
Protein description: L-rhamnose-proton symporter

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03016
Location and strand information: 43794 - 45047 (-)
Family: null
Protein type: null
Protein description: L-rhamnose isomerase

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03017
Location and strand information: 45094 - 46560 (-)
Family: null
Protein type: null
Protein description: L-Rhamnulokinase

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03018
Location and strand information: 46677 - 48209 (-)
Family: GH28
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.1899
Protein molecular weight: 56684.02
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03019
Location and strand information: 48250 - 51030 (-)
Family: GH106
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.6678
Protein molecular weight: 103989.38
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004748_21|CGC1
Gene ID: MGYG000004748_03020
Location and strand information: 51033 - 53561 (-)
Family: GH105
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.6328
Protein molecular weight: 95871.93
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000004748_02993	GH2_e11\|3.2.1.31	beta-glucuronan
MGYG000004748_02998	CE12_e46
MGYG000004748_03000	PL11_e0\|CBM35_e56\|4.2.2.23	pectin
MGYG000004748_03001	PL9_e26\|4.2.2.23	pectin
MGYG000004748_03004	CE4_e36
MGYG000004748_03007	GH2_e89\|3.2.1.23	beta-galactan
MGYG000004748_03008	PL1_e64\|4.2.2.2	pectin
MGYG000004748_03012	GH105_e39
MGYG000004748_03018	GH28_e61
MGYG000004748_03019	GH106_e0\|3.2.1.174	pectin
MGYG000004748_03020	GH105_e12

You are here: cgc-> ?help

CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000004748_02993	Beta-galactosidase	CAZyme	83	3073	-	GH2
MGYG000004748_02994	SusD-like protein	null	3090	4667	-	SusD-like_3\| SusD_RagB
MGYG000004748_02995	TonB-dependent receptor SusC	TC	4682	7783	-	1.B.14.6.1
MGYG000004748_02996	hypothetical protein	null	8032	8940	+	SASA
MGYG000004748_02997	hypothetical protein	null	9098	9874	-	No domain
MGYG000004748_02998	hypothetical protein	CAZyme	9903	11183	-	CE12
MGYG000004748_02999	hypothetical protein	null	11194	12870	-	Mfa_like_1
MGYG000004748_03000	Rhamnogalacturonan endolyase YesW	CAZyme	13118	15031	+	PL11\| CBM35\| PL11_1
MGYG000004748_03001	Pectate lyase L	CAZyme	15044	16615	+	PL9\| PL9_1
MGYG000004748_03002	hypothetical protein	null	16643	17056	+	No domain
MGYG000004748_03003	Sensor histidine kinase RcsC	TF	17091	21413	-	HTH_AraC
MGYG000004748_03004	hypothetical protein	CAZyme	21499	22458	-	CE0\| CE4
MGYG000004748_03005	hypothetical protein	null	22554	25805	-	No domain
MGYG000004748_03006	hypothetical protein	null	25985	28096	-	No domain
MGYG000004748_03007	Beta-galactosidase	CAZyme	28277	31135	-	GH2
MGYG000004748_03008	hypothetical protein	CAZyme	31242	32618	-	PL1\| PL1_2
MGYG000004748_03009	hypothetical protein	null	32737	34731	-	SusD-like_3\| SusD_RagB
MGYG000004748_03010	TonB-dependent receptor SusC	TC	34745	37987	-	1.B.14.6.1
MGYG000004748_03011	HTH-type transcriptional activator RhaS	TF	38229	39155	-	HTH_AraC+HTH_AraC
MGYG000004748_03012	hypothetical protein	CAZyme	39301	40626	-	GH105
MGYG000004748_03013	Lactaldehyde reductase	null	40648	41793	-	Fe-ADH
MGYG000004748_03014	Rhamnulose-1-phosphate aldolase	null	41818	42627	-	Aldolase_II
MGYG000004748_03015	L-rhamnose-proton symporter	TC	42677	43708	-	2.A.7.6.1
MGYG000004748_03016	L-rhamnose isomerase	null	43794	45047	-	RhaA
MGYG000004748_03017	L-Rhamnulokinase	null	45094	46560	-	FGGY_N\| FGGY_C
MGYG000004748_03018	hypothetical protein	CAZyme	46677	48209	-	GH28
MGYG000004748_03019	hypothetical protein	CAZyme	48250	51030	-	GH106
MGYG000004748_03020	hypothetical protein	CAZyme	51033	53561	-	GH105
Protein ID	Protein Name	Type	Start	End	Strand	Signature