dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01594
Location and strand information: 9691 - 10506 (+)
Family: CE4
Protein type: CAZyme
Protein description: Peptidoglycan-N-acetylmuramic acid deacetylase PdaA
Protein isoelectric point: 4.9499
Protein molecular weight: 29918.93
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01595
Location and strand information: 10539 - 10952 (-)
Family: null
Protein type: null
Protein description: Lipoprotein signal peptidase

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01596
Location and strand information: 10946 - 13585 (-)
Family: null
Protein type: null
Protein description: Peptide chain release factor 3

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01597
Location and strand information: 14223 - 15761 (+)
Family: 2.A.14.1.3
Protein type: TC
Protein description: L-lactate permease

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01598
Location and strand information: 15789 - 16739 (+)
Family: null
Protein type: null
Protein description: L-lactate dehydrogenase 2

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01599
Location and strand information: 16773 - 17834 (+)
Family: null
Protein type: null
Protein description: Branched-chain-amino-acid aminotransferase 2

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01600
Location and strand information: 17965 - 18759 (-)
Family: 3.A.1.34.1
Protein type: TC
Protein description: Carnitine transport ATP-binding protein OpuCA

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01601
Location and strand information: 18761 - 19666 (-)
Family: 3.A.1.34.1
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01602
Location and strand information: 19742 - 20797 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01603
Location and strand information: 21540 - 22061 (+)
Family: 3.A.1.106.4
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004784_29|CGC1
Gene ID: MGYG000004784_01604
Location and strand information: 22122 - 23477 (-)
Family: 2.A.40.2.1
Protein type: TC
Protein description: Xanthine permease XanQ

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CGC gene composition diagram

Gene composition table

Substrate predicted by dbCAN-PUL is capsule polysaccharide synthesis download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000004784_01594	Peptidoglycan-N-acetylmuramic acid deacetylase PdaA	CAZyme	9691	10506	+	CE4
MGYG000004784_01595	Lipoprotein signal peptidase	null	10539	10952	-	Peptidase_A8
MGYG000004784_01596	Peptide chain release factor 3	null	10946	13585	-	GTP_EFTU\| EFG_IV\| EFG_C\| NYN_YacP
MGYG000004784_01597	L-lactate permease	TC	14223	15761	+	2.A.14.1.3
MGYG000004784_01598	L-lactate dehydrogenase 2	null	15789	16739	+	Ldh_1_N\| Ldh_1_C
MGYG000004784_01599	Branched-chain-amino-acid aminotransferase 2	null	16773	17834	+	Aminotran_4
MGYG000004784_01600	Carnitine transport ATP-binding protein OpuCA	TC	17965	18759	-	3.A.1.34.1
MGYG000004784_01601	hypothetical protein	TC	18761	19666	-	3.A.1.34.1
MGYG000004784_01602	hypothetical protein	null	19742	20797	-	ABC_sub_bind
MGYG000004784_01603	hypothetical protein	TC	21540	22061	+	3.A.1.106.4
MGYG000004784_01604	Xanthine permease XanQ	TC	22122	23477	-	2.A.40.2.1
Protein ID	Protein Name	Type	Start	End	Strand	Signature