dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02658
Location and strand information: 2604 - 4808 (+)
Family: CBM4|GH10
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.4628
Protein molecular weight: 81522.48
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02659
Location and strand information: 5105 - 7069 (+)
Family: GH5_21|GH5|GH43
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.7
Protein molecular weight: 72734.73
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02660
Location and strand information: 7091 - 7249 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02661
Location and strand information: 7405 - 10635 (+)
Family: GH95|CE1|CE6
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.1731
Protein molecular weight: 119968.8
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02662
Location and strand information: 10716 - 14813 (-)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: Sensor histidine kinase RcsC

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02663
Location and strand information: 15017 - 17056 (-)
Family: GH67
Protein type: CAZyme
Protein description: Extracellular xylan exo-alpha-(1->2)-glucuronosidase
Protein isoelectric point: 6.294
Protein molecular weight: 78118.68
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02664
Location and strand information: 17068 - 18045 (-)
Family: 3.2.1.37|GH43|GH43_1
Protein type: CAZyme
Protein description: Xylosidase/arabinosidase
Protein isoelectric point: 4.7492
Protein molecular weight: 37275.56
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02665
Location and strand information: 18064 - 19254 (-)
Family: GH10|GH43_12
Protein type: CAZyme
Protein description: Endo-1,4-beta-xylanase A
Protein isoelectric point: 5.3257
Protein molecular weight: 44663.63
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02666
Location and strand information: 19272 - 20768 (-)
Family: 2.A.2.3.4
Protein type: TC
Protein description: Inner membrane symporter YicJ

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02667
Location and strand information: 20785 - 22473 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02668
Location and strand information: 22512 - 24218 (-)
Family: GH35
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.7748
Protein molecular weight: 64348.4
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02669
Location and strand information: 24462 - 26840 (-)
Family: CBM22|GH10
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.3616
Protein molecular weight: 87905.49
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02670
Location and strand information: 26887 - 28263 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02671
Location and strand information: 28282 - 29982 (-)
Family: null
Protein type: null
Protein description: SusD-like protein

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02672
Location and strand information: 30002 - 33148 (-)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02673
Location and strand information: 33593 - 37687 (+)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: Sensor histidine kinase RcsC

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02674
Location and strand information: 37729 - 38934 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_39|CGC1
Gene ID: MGYG000004876_02675
Location and strand information: 38935 - 39579 (-)
Family: 3.A.1.12.5
Protein type: TC
Protein description: Lipoprotein-releasing system ATP-binding protein LolD

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is xylan

Substrate predicted by dbCAN-PUL is xylan download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000004876_02658	hypothetical protein	CAZyme	2604	4808	+	CBM4\| GH10
MGYG000004876_02659	hypothetical protein	CAZyme	5105	7069	+	GH5_21\| GH5\| GH43
MGYG000004876_02660	hypothetical protein	null	7091	7249	+	Glyco_hydro_10
MGYG000004876_02661	hypothetical protein	CAZyme	7405	10635	+	GH95\| CE1\| CE6
MGYG000004876_02662	Sensor histidine kinase RcsC	TF	10716	14813	-	HTH_AraC+HTH_AraC
MGYG000004876_02663	Extracellular xylan exo-alpha-(1->2)-glucuronosidase	CAZyme	15017	17056	-	GH67
MGYG000004876_02664	Xylosidase/arabinosidase	CAZyme	17068	18045	-	3.2.1.37\| GH43\| GH43_1
MGYG000004876_02665	Endo-1,4-beta-xylanase A	CAZyme	18064	19254	-	GH10\| GH43_12
MGYG000004876_02666	Inner membrane symporter YicJ	TC	19272	20768	-	2.A.2.3.4
MGYG000004876_02667	hypothetical protein	null	20785	22473	-	SASA\| Glyco_hydro_2_N\| SASA
MGYG000004876_02668	hypothetical protein	CAZyme	22512	24218	-	GH35
MGYG000004876_02669	hypothetical protein	CAZyme	24462	26840	-	CBM22\| GH10
MGYG000004876_02670	hypothetical protein	null	26887	28263	-	SGBP_B_XBD
MGYG000004876_02671	SusD-like protein	null	28282	29982	-	SusD-like_3\| SusD_RagB
MGYG000004876_02672	TonB-dependent receptor SusC	TC	30002	33148	-	1.B.14.6.1
MGYG000004876_02673	Sensor histidine kinase RcsC	TF	33593	37687	+	HTH_AraC+HTH_AraC
MGYG000004876_02674	hypothetical protein	null	37729	38934	-	No domain
MGYG000004876_02675	Lipoprotein-releasing system ATP-binding protein LolD	TC	38935	39579	-	3.A.1.12.5
Protein ID	Protein Name	Type	Start	End	Strand	Signature

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000004876_02658	GH10_e9\|CBM4_e10\|3.2.1.8	xylan
MGYG000004876_02659	GH5_e31\|GH43_e200\|3.2.1.8	xylan
MGYG000004876_02661	CE6_e7\|CE1_e61\|3.1.1.72	xylan
MGYG000004876_02663	GH67_e0\|3.2.1.139\|3.2.1.131\|3.2.1.-	xylan
MGYG000004876_02664	GH43_e85\|3.2.1.55\|3.2.1.37	xylan
MGYG000004876_02665	GH10_e61
MGYG000004876_02668	GH35_e24
MGYG000004876_02669