CAZyme Information: MGYG000002343_00541

Basic Information

• Species: Acinetobacter courvalinii
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter courvalinii
• CAZyme ID: MGYG000002343_00541
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
921	MGYG000002343_1|CGC6	102105.57	5.8143

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002343	4074146	Isolate	United States	North America

• Gene Location: Start: 554454; End: 557219 Strand: +

Full Sequence      

MLANIFQALESLGLTAQKRAIHIQFSNQNLNTQVFLQRIDGQHALNAGFKAELICLSTNA
SIPLKQFIGSQAAIDTVTDQGQLSRVTGIITQALQGQSDGSLTLYKLTLEDPTALWKQRR
NSRVFMNKSVRDVVEVVFKEWQQKSPLFASSLTLDLSGLSQDYDVRPFIMQSNESDYDFV
TRLLRSEGINWLVDEAERTVPQSSAAIQPQKLRLIDDNSQYQALDRHQIRYHRSSATEQY
DSMTSLVGQRSLQPSAVHVQRWQADALEQEDGAGSVQSTHKHSEQHDNASLGLEQAWHFS
PAWMQDLNGEDGATQSGNAQIEKLNQNLGQYYDLQSKQFVAKTTVRDTHVGYWFELAEHP
EIDQHDGSDKEFLITGKHFYNQNNLPKDLHQQIHQLLAQSNWQPSQQSNTEERQANQLIL
QRRNIKTVPEFNPLQHRPAASPQRAKVVGPSGEEIHVDEWGRIKVRFLFTRSEDHSHDGG
AGANDNDTDSAWVDVLTPWAGEGYGARFLPRINEIVVIDFFDGNIDRPFVVGRIHEAQRS
PSKFDNAGKLPDTKKLAGIKSKEYQGEGFNQLRFDDTTGQISAQLQSSHAASQLNLGKLS
HPKDKAESEDRGEGFELRTDQWGAVRAGEGLLVSTHKQDQAQGEHLDAQPAKQQLEGNLS
NAKALSEVAKNQQTDEIESLDQLKAFADEIEADIAKFNKAMLLLSSPAGIGLSTNEDIHL
SADGQINQFAGDSINLSTQKNLVAHVSGKASLFAAQNGIKQVAAKGKFEVQAQGDGMDLL
AKQGIQIISTEDRIEITSPKEIVITAGGSQIKLDGSGIFPVTGGKFEVKAGQHLFMGGAK
VEAPERKFNSSPCYLTYQVTDSLGEPLKNKNYMMYLADGTVKKGKTNAKGETQRVESAGP
QKVNILIDDEDHKGYQISQLN

Enzyme Prediction     

No EC number prediction in MGYG000002343_00541.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3501	VgrG	1.60e-96	33	629	24	532	Uncharacterized conserved protein, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only].
TIGR03361	VI_Rhs_Vgr	2.84e-80	36	580	14	485	type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.
pfam05954	Phage_GPD	5.10e-63	42	385	1	305	Phage late control gene D protein (GPD). This family includes a number of phage late control gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences.
TIGR01646	vgr_GE	2.00e-58	34	589	1	482	Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.
COG4253	COG4253	9.73e-55	645	907	1	275	Uncharacterized conserved protein, DUF2345 family [Function unknown].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATZ63848.1	0.0	1	841	1	843
ATZ63530.1	0.0	1	843	1	849
QIP93854.1	6.77e-32	16	579	136	624
AZS26707.1	4.58e-29	48	595	41	510
ASW82516.1	4.58e-29	48	595	41	510

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6SJL_A	9.26e-42	36	905	33	829	Structureof the Tle1 effector bound to the VgrG spike from the Type 6 secretion system [Escherichia coli],6SJL_B Structure of the Tle1 effector bound to the VgrG spike from the Type 6 secretion system [Escherichia coli],6SJL_C Structure of the Tle1 effector bound to the VgrG spike from the Type 6 secretion system [Escherichia coli],6SK0_A The VgrG spike from the Type 6 secretion system [Escherichia coli],6SK0_B The VgrG spike from the Type 6 secretion system [Escherichia coli],6SK0_C The VgrG spike from the Type 6 secretion system [Escherichia coli],6SKI_A The Tle hydrolase bound to the TTR domain of the VgrG spike of the Type 6 secretion system [Escherichia coli]
4MTK_A	4.11e-32	34	646	18	561	Crystalstructure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_B Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_C Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_D Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_E Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_F Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],6H3L_A Structure of VgrG1 in the Type VI secretion 'pre-firing' VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex [Pseudomonas aeruginosa PAO1],6H3L_B Structure of VgrG1 in the Type VI secretion 'pre-firing' VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex [Pseudomonas aeruginosa PAO1],6H3L_C Structure of VgrG1 in the Type VI secretion 'pre-firing' VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex [Pseudomonas aeruginosa PAO1],6H3N_A Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs [Pseudomonas aeruginosa PAO1],6H3N_B Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs [Pseudomonas aeruginosa PAO1],6H3N_C Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs [Pseudomonas aeruginosa PAO1]
4UHV_A	5.64e-31	34	646	18	561	Thestructure of VgrG1, the needle tip of the bacterial Type VI Secretion System [Pseudomonas aeruginosa PAO1],4UHV_B The structure of VgrG1, the needle tip of the bacterial Type VI Secretion System [Pseudomonas aeruginosa PAO1]
7Q5P_A	3.00e-30	34	579	21	495	ChainA, Type VI secretion protein VgrG [Pseudomonas protegens Pf-5],7Q5P_B Chain B, Type VI secretion protein VgrG [Pseudomonas protegens Pf-5],7Q5P_C Chain C, Type VI secretion protein VgrG [Pseudomonas protegens Pf-5]
2P5Z_X	5.12e-07	22	537	16	473	TheE. coli c3393 protein is a component of the type VI secretion system and exhibits structural similarity to T4 bacteriophage tail proteins gp27 and gp5 [Escherichia coli O6]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q9I6M7	4.81e-64	42	896	27	817	Type VI secretion system spike protein VgrG2b OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG2b PE=1 SV=1
Q9I3K1	5.04e-62	42	907	27	828	Type VI secretion system spike protein VgrG2a OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG2a PE=3 SV=1
Q9I0F3	1.21e-32	3	579	29	532	Type VI secretion system spike protein VgrG1c OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG1c PE=1 SV=1
Q9I737	9.36e-32	12	579	1	495	Type VI secretion system spike protein VgrG1b OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG1b PE=3 SV=1
Q9I741	2.25e-31	34	646	18	561	Type VI secretion system spike protein VgrG1a OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG1a PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000057	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002343_00541.