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CAZyme Information: MGYG000002343_00637

You are here: Home > Sequence: MGYG000002343_00637

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Acinetobacter courvalinii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter courvalinii
CAZyme ID MGYG000002343_00637
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
947 105145.25 5.8663
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002343 4074146 Isolate United States North America
Gene Location Start: 657905;  End: 660748  Strand: -

Full Sequence      Download help

MLKNIFQALE  TLGLNAQKRA  IHAQFSNSSL  NDQVFLQYVE  GTHQLNQGIE  LQLLCLSTSA60
VIPLKSFIGS  QVAIDIVTDR  AELTRITGIV  TQADVGASDG  SLTLYKLGVQ  DPTALWKHRR120
NSRVFMAKSV  PDVIQTIFKE  WQSKSPLFAA  SLTLDVSGLS  KDYDVRPFIM  QSNESDYDFL180
TRLMRSEGIN  WLIDEAQLKV  ASSSEQIQAQ  KLRLIDDNTQ  YNALDRRHIR  FHRTSATETQ240
DSITAFVAQR  TLQPGAVHIQ  RWQADALEQE  EGAGSVQSKH  QHSDQHDNQQ  LALEQAWHFS300
PAWIQDLNGE  DGTTKAGNAQ  IEKLNQNLGQ  YYDAQAKQFV  ANSTVRDAQV  GYWFELNEHP360
EIDQHQGADK  EFLITSKRFY  NQNNLPKDLT  DQVHALLQHS  HWQLKGLSAA  QADERQANQL420
TLQRRNMALV  PEYNPLQHRP  AAHPQRARVV  GPSGDEIHVD  EWGRIKVRFL  FTRTEDHSHD480
GGAGANDNDT  DSAWIDVLTP  WAGEGYGARF  LPRIGEIVVI  NFFDGNIDRP  YVVGRIHEAQ540
RSPTKFDNAG  KLPDTKKLAG  IKSKEYQGEG  FNQLRFDDTT  GQISAQLQSS  HAASQLNLGK600
LSHPKDKAES  EDRGEGFELR  TDQWGALRAG  QGLLLSTQKQ  DQAQGEHLDA  EPAKQQLESN660
QSNAKALSEV  AKNQQTDEIE  SVEQLKAFAE  QIEVKIARFN  KALLLLSSPA  GIGLSTHEDI720
HVSADGQINQ  IAGNSINLST  QKNLITHAQN  RISLFAAQNG  IKQVAAKGKF  EVHAQSDGMD780
LLAKQGIQII  STEDRIEITS  PKEIVITAGG  SQIKLNGSGI  FPTTSGKFEV  KAGQHLFMGG840
ANVQLTPITL  PGADIKNWIE  LDYLDPETRK  GIANNGYKIF  FKNGTTLAGK  LDANGFARHE900
NVPPETIKKV  VYETQEGKEK  IANPLEELLE  IEDDSSIRSY  GDVNNGE947

Enzyme Prediction      help

No EC number prediction in MGYG000002343_00637.

CDD Domains      download full data without filtering help

Created with Snap479414218923628433137842647352056861566271075780485289914631VgrG40582VI_Rhs_Vgr42385Phage_GPD34591vgr_GE695841DUF2345
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3501 VgrG 2.96e-100 14 631 5 532
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only].
TIGR03361 VI_Rhs_Vgr 1.46e-81 40 582 18 485
type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.
pfam05954 Phage_GPD 4.77e-64 42 385 1 305
Phage late control gene D protein (GPD). This family includes a number of phage late control gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences.
TIGR01646 vgr_GE 6.66e-62 34 591 1 482
Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.
pfam10106 DUF2345 2.79e-50 695 841 5 151
Uncharacterized protein conserved in bacteria (DUF2345). Members of this family are found in various bacterial hypothetical proteins, as well as Rhs element Vgr proteins.

CAZyme Hits      help

Created with Snap47941421892362843313784264735205686156627107578048528991865ATZ63848.1|CBM501851ATZ63530.1|CBM5086581QIP93854.1|GH7339662QEL49532.1|GH10839662AVF15566.1|GH108
Hit ID E-Value Query Start Query End Hit Start Hit End
ATZ63848.1 0.0 1 865 1 865
ATZ63530.1 0.0 1 851 1 855
QIP93854.1 6.71e-31 86 581 207 624
QEL49532.1 1.55e-29 39 662 19 572
AVF15566.1 2.70e-29 39 662 19 572

PDB Hits      download full data without filtering help

Created with Snap47941421892362843313784264735205686156627107578048528994959216SJL_A325817Q5P_A325984MTK_A325984UHV_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SJL_A 1.60e-38 495 921 436 836
Structureof the Tle1 effector bound to the VgrG spike from the Type 6 secretion system [Escherichia coli],6SJL_B Structure of the Tle1 effector bound to the VgrG spike from the Type 6 secretion system [Escherichia coli],6SJL_C Structure of the Tle1 effector bound to the VgrG spike from the Type 6 secretion system [Escherichia coli],6SK0_A The VgrG spike from the Type 6 secretion system [Escherichia coli],6SK0_B The VgrG spike from the Type 6 secretion system [Escherichia coli],6SK0_C The VgrG spike from the Type 6 secretion system [Escherichia coli],6SKI_A The Tle hydrolase bound to the TTR domain of the VgrG spike of the Type 6 secretion system [Escherichia coli]
7Q5P_A 9.56e-29 32 581 19 495
ChainA, Type VI secretion protein VgrG [Pseudomonas protegens Pf-5],7Q5P_B Chain B, Type VI secretion protein VgrG [Pseudomonas protegens Pf-5],7Q5P_C Chain C, Type VI secretion protein VgrG [Pseudomonas protegens Pf-5]
4MTK_A 9.09e-28 32 598 16 507
Crystalstructure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_B Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_C Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_D Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_E Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],4MTK_F Crystal structure of PA0091 VgrG1, the central spike of the Type VI Secretion System [Pseudomonas aeruginosa PAO1],6H3L_A Structure of VgrG1 in the Type VI secretion 'pre-firing' VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex [Pseudomonas aeruginosa PAO1],6H3L_B Structure of VgrG1 in the Type VI secretion 'pre-firing' VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex [Pseudomonas aeruginosa PAO1],6H3L_C Structure of VgrG1 in the Type VI secretion 'pre-firing' VgrG1-Tse6-EagT6-EF-Tu-Tsi6 complex [Pseudomonas aeruginosa PAO1],6H3N_A Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs [Pseudomonas aeruginosa PAO1],6H3N_B Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs [Pseudomonas aeruginosa PAO1],6H3N_C Structure of VgrG1 in the Type VI secretion VgrG1-Tse6-EF-Tu complex embedded in lipid nanodiscs [Pseudomonas aeruginosa PAO1]
4UHV_A 3.69e-26 32 598 16 507
Thestructure of VgrG1, the needle tip of the bacterial Type VI Secretion System [Pseudomonas aeruginosa PAO1],4UHV_B The structure of VgrG1, the needle tip of the bacterial Type VI Secretion System [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits      download full data without filtering help

Created with Snap4794142189236284331378426473520568615662710757804852899429895sp|Q9I6M7|VGR2B_PSEAE429842sp|Q9I3K1|VGR2A_PSEAE8589sp|Q9KNE7|VGRG2_VIBCH19581sp|Q9I0F3|VGR1C_PSEAE36581sp|Q9I737|VGR1B_PSEAE
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9I6M7 1.49e-60 429 895 350 811
Type VI secretion system spike protein VgrG2b OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG2b PE=1 SV=1
Q9I3K1 1.27e-55 429 842 350 760
Type VI secretion system spike protein VgrG2a OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG2a PE=3 SV=1
Q9KNE7 9.26e-29 8 589 7 505
Type VI secretion system spike protein VgrG2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=vgrG2 PE=3 SV=1
Q9I0F3 2.45e-28 19 581 45 532
Type VI secretion system spike protein VgrG1c OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG1c PE=1 SV=1
Q9I737 2.59e-28 36 581 23 495
Type VI secretion system spike protein VgrG1b OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=vgrG1b PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000056 0.000003 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002343_00637.