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CAZyme Information: MGYG000004379_00172
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | CAG-628 sp000438415 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; RF39; UBA660; CAG-628; CAG-628 sp000438415 | |||||||||||
| CAZyme ID | MGYG000004379_00172 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 431; End: 1279 Strand: + | |||||||||||
Full Sequence Download help
| MPYVAPTESD FYTVQKGDSL WKIATKFGIT VDELKELNNL KNNTITVGQN LKVKLTEEKP | 60 |
| IEDYLLYTVK SGDSLWKIAS MYDTTVDTLM SINNLKGTTL TINQQLLVPK KKDIDIDINK | 120 |
| NDKGIYYTVK SGDTLYKIAS SYNVGVDKIK SANKLNSNIL QIGQVLLIPV ETTDVTETTP | 180 |
| STSNGISYVV VKGDNLYNIA NKYKVSVSDI KSLNNLKSNT LQIGQILKIP GTEAYANYTV | 240 |
| KKGDSLWKIA NKYGVTVNEL KQVNNLSGTT LQIGDVLLIP TK | 282 |
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CBM50 | 238 | 280 | 2.6e-17 | 0.975 |
| CBM50 | 127 | 169 | 1.4e-16 | 0.975 |
| CBM50 | 12 | 53 | 1.8e-16 | 0.95 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK06347 | PRK06347 | 2.21e-40 | 7 | 279 | 328 | 591 | 1,4-beta-N-acetylmuramoylhydrolase. |
| PRK06347 | PRK06347 | 1.31e-20 | 181 | 277 | 326 | 447 | 1,4-beta-N-acetylmuramoylhydrolase. |
| PRK10783 | mltD | 5.31e-17 | 181 | 277 | 339 | 444 | membrane-bound lytic murein transglycosylase D; Provisional |
| PRK10783 | mltD | 1.57e-16 | 59 | 224 | 256 | 441 | membrane-bound lytic murein transglycosylase D; Provisional |
| pfam01476 | LysM | 2.86e-15 | 238 | 280 | 1 | 43 | LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QUF66404.1 | 1.29e-41 | 5 | 232 | 84 | 334 |
| ARJ74343.1 | 1.65e-41 | 7 | 233 | 89 | 348 |
| AIK48932.1 | 1.80e-41 | 5 | 231 | 84 | 333 |
| ADP31413.1 | 1.80e-41 | 5 | 231 | 84 | 333 |
| AMR63616.1 | 1.80e-41 | 5 | 231 | 84 | 333 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4B8V_A | 5.21e-11 | 107 | 230 | 20 | 161 | ChainA, Extracellular Protein 6 [Fulvia fulva],4B9H_A Chain A, Extracellular Protein 6 [Fulvia fulva] |
| 5JCD_A | 1.92e-07 | 65 | 230 | 17 | 192 | Crystalstructure of OsCEBiP [Oryza sativa Japonica Group],5JCD_B Crystal structure of OsCEBiP [Oryza sativa Japonica Group],5JCD_C Crystal structure of OsCEBiP [Oryza sativa Japonica Group] |
| 2MKX_A | 3.18e-07 | 126 | 168 | 6 | 48 | Solutionstructure of LysM the peptidoglycan binding domain of autolysin AtlA from Enterococcus faecalis [Enterococcus faecalis V583] |
| 5JCE_A | 4.11e-07 | 65 | 230 | 17 | 192 | Crystalstructure of OsCEBiP complex [Oryza sativa Japonica Group],5JCE_B Crystal structure of OsCEBiP complex [Oryza sativa Japonica Group] |
| 4UZ2_A | 1.59e-06 | 187 | 233 | 4 | 50 | Crystalstructure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus [Thermus thermophilus HB8],4UZ2_B Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus [Thermus thermophilus HB8],4UZ2_C Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus [Thermus thermophilus HB8],4UZ2_D Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus [Thermus thermophilus HB8],4UZ3_A Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus bound to N-acetyl-chitohexaose [Thermus thermophilus HB8],4UZ3_B Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus bound to N-acetyl-chitohexaose [Thermus thermophilus HB8],4UZ3_C Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus bound to N-acetyl-chitohexaose [Thermus thermophilus HB8] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| O07532 | 5.00e-37 | 12 | 231 | 94 | 352 | Peptidoglycan endopeptidase LytF OS=Bacillus subtilis (strain 168) OX=224308 GN=lytF PE=1 SV=2 |
| O31852 | 3.34e-33 | 5 | 231 | 22 | 270 | D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlS PE=1 SV=1 |
| P37710 | 1.53e-27 | 11 | 229 | 498 | 736 | Autolysin OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=EF_0799 PE=1 SV=2 |
| P54421 | 3.54e-26 | 69 | 232 | 30 | 195 | Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis (strain 168) OX=224308 GN=lytE PE=1 SV=1 |
| P39046 | 1.11e-22 | 12 | 227 | 414 | 662 | Muramidase-2 OS=Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258 / NCTC 12367 / WDCM 00089 / R) OX=768486 GN=EHR_05900 PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000037 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |