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CAZyme Information: MGYG000000011_01218

You are here: Home > Sequence: MGYG000000011_01218

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Staphylococcus xylosus_B
Lineage Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus xylosus_B
CAZyme ID MGYG000000011_01218
CAZy Family GH0
CAZyme Description HTH-type transcriptional activator RhaS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
763 MGYG000000011_2|CGC2 90923.37 7.9848
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000011 2927352 Isolate United Kingdom Europe
Gene Location Start: 177736;  End: 180027  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000000011_01218.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3664 XynB 5.80e-58 331 758 1 427
Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207 AraC 2.77e-25 158 261 21 124
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342 HTH_ARAC 7.05e-24 174 256 2 84
helix_turn_helix, arabinose operon control protein.
pfam12833 HTH_18 2.24e-20 179 258 1 81
Helix-turn-helix domain.
COG2169 AdaA 5.20e-15 158 261 83 184
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDW88232.1 0.0 1 761 1 761
QRA17052.1 0.0 1 762 1 765
QKU18815.1 1.12e-297 1 759 1 760
QKV10510.1 4.85e-294 1 758 1 758
QKQ09438.1 6.87e-294 1 758 1 758

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3OOU_A 1.27e-11 162 257 10 105
Thestructure of a protein with unkown function from Listeria innocua [Listeria innocua]
6SWI_A 3.62e-07 165 256 13 105
TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
1XS9_A 8.57e-07 146 256 3 113
ChainA, Multiple antibiotic resistance protein marA [Escherichia coli]
1BL0_A 1.49e-06 151 256 5 110
MultipleAntibiotic Resistance Protein (Mara)DNA COMPLEX [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q6GD21 5.04e-131 22 758 22 742
Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q8NYT6 5.04e-131 22 758 22 742
Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q99XB1 1.97e-130 22 758 22 742
Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1
Q7A882 1.97e-130 22 758 22 742
Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q5HJR8 3.89e-130 23 758 23 742
Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000053 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000011_01218.