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CAZyme Information: MGYG000000793_00187

You are here: Home > Sequence: MGYG000000793_00187

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Succinivibrio sp900548485
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Succinivibrionaceae; Succinivibrio; Succinivibrio sp900548485
CAZyme ID MGYG000000793_00187
CAZy Family GH105
CAZyme Description Unsaturated rhamnogalacturonyl hydrolase YteR
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
361 MGYG000000793_12|CGC1 41447.36 6.313
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000793 1894833 MAG China Asia
Gene Location Start: 11726;  End: 12811  Strand: -

Full Sequence      Download help

MNYSQWMADS  IIAHKINLTD  HWGYEYGLTL  EGIYDVYKKT  SDKKYLDFIT  KTMDTFINAD60
GSINGYRLDE  HNIDHLNNGK  IVLKLWDETS  DERYKKAAFN  LHEQIKTHPR  TSEGVFWHKA120
IYPHQIWCDG  LYMGAAFLAA  FASRFGNEQD  FDDIAMQFLK  SYPHLKDEKT  GLLYHAYDES180
KSMYWCDPNT  GVSPHFWARA  MGWYVMALAD  VIELMPRTHK  DRQALCAILK  DCLISLVKVQ240
DKNAGVWYQI  LDLAERKQNY  LEASASCMIT  AALFKAIRLN  ILDESFTKIA  KFAYQGLIAE300
FVLETPEHLL  NLNKICYVGG  LGGQVRRDGS  FAYYMSEPII  SNEPKGLGPF  LFASIENEVK360
A361

Enzyme Prediction      help

No EC number prediction in MGYG000000793_00187.

CAZyme Signature Domains help

Created with Snap183654729010812614416218019821623425227028830632434219356GH105
Family Start End Evalue family coverage
GH105 19 356 2e-111 0.9608433734939759

CDD Domains      download full data without filtering help

Created with Snap18365472901081261441621801982162342522702883063243423356YesR3356Glyco_hydro_88
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4225 YesR 1.33e-125 3 356 15 352
Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism].
pfam07470 Glyco_hydro_88 5.79e-106 3 356 1 338
Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.

CAZyme Hits      help

Created with Snap18365472901081261441621801982162342522702883063243423358AAK78339.1|GH1053358AEI33983.1|GH1053358ADZ19408.1|GH1053358AWV80064.1|GH1052358AIF50373.1|GH105
Hit ID E-Value Query Start Query End Hit Start Hit End
AAK78339.1 1.70e-176 3 358 4 359
AEI33983.1 1.70e-176 3 358 4 359
ADZ19408.1 1.70e-176 3 358 4 359
AWV80064.1 1.70e-176 3 358 4 359
AIF50373.1 1.16e-162 2 358 3 359

PDB Hits      download full data without filtering help

Created with Snap183654729010812614416218019821623425227028830632434233584WU0_A13581NC5_A13582GH4_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
4WU0_A 6.20e-178 3 358 4 359
StructuralAnalysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824],4WU0_B Structural Analysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824]
1NC5_A 1.31e-78 1 358 14 365
Structureof Protein of Unknown Function of YteR from Bacillus Subtilis [Bacillus subtilis],2D8L_A Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc [Bacillus subtilis]
2GH4_A 5.47e-78 1 358 4 355
ChainA, Putative glycosyl hydrolase yteR [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Created with Snap18365472901081261441621801982162342522702883063243421358sp|O34559|URHG2_BACSU133357sp|P0A3U6|PIC1_AGRFC133357sp|P0A3U7|PIC1_RHIRD
Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34559 7.15e-78 1 358 14 365
Unsaturated rhamnogalacturonyl hydrolase YteR OS=Bacillus subtilis (strain 168) OX=224308 GN=yteR PE=1 SV=1
P0A3U6 5.76e-32 133 357 1 228
Protein Atu3128 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu3128 PE=3 SV=1
P0A3U7 5.76e-32 133 357 1 228
24.9 kDa protein in picA locus OS=Rhizobium radiobacter OX=358 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000082 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000793_00187.