logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000000303_00276

You are here: Home > Sequence: MGYG000000303_00276

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Varibaculum cambriense_A
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum cambriense_A
CAZyme ID MGYG000000303_00276
CAZy Family CBM48
CAZyme Description 1,4-alpha-glucan branching enzyme GlgB
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
727 MGYG000000303_2|CGC3 82883.04 4.5618
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000303 2213433 MAG Sweden Europe
Gene Location Start: 97007;  End: 99190  Strand: -

Full Sequence      Download help

MNAKPVPVDP  DVLANVAHGR  YFDPHSVLGT  HVGEDSVTIR  TVAHLADAVE  IITPKGTFPA60
THEQDGIWVT  VLDGTEIPDY  RVRTTYGEET  TELDDGYRYL  PTVGEFDLYL  ISEGRHERLW120
EVLGAHLRTY  ETEMGQTKGA  SFAVWAPNAQ  AVRVVGDFNY  WDGETSSMRS  LGSSGVWELF180
IPDVEIGARY  KFEILRPDGT  WQQKADPMAR  ACEIPPLTAS  VVTDKHHQWE  DQEWMDKRAK240
TNPHNSPMSV  YEMHIGSWSY  DTHYRDLADD  LVTYVKDMGF  THVEMMPVSE  HPFYGSWGYQ300
QSGYYAPSSR  YGTPDDFRYL  VDKLHQAGIG  VIMDWVPGHF  PKDQFALADF  DGTKLYEHPD360
PTRGEQPDWG  TLIFNFGRNE  VRNFLVANAL  YWLDEFHIDG  LRVDAVASML  YLDYSREEGQ420
WHPNQYGGRE  NLEAISFLQE  TNATCYRLYP  GICMIAEEST  AWPGVTAPTD  AGGLGFGLKW480
NMGWMNDTLR  YLREDPVNRS  WHHGELTFSL  VYAFSEHYIL  PLSHDEVVYG  KGSILAKQPG540
DYWRQLAGVR  SLYAYQWSHP  GKQLLFMGGE  FAQGAEWDAN  RSLDWFLLDD  ERNQGVQALV600
RDLNQIYTTD  PALWDDEHTG  FEWIESNDSE  HNVISYVRKS  RDDHGREHKM  VCICNFAGNP660
HEGYRVGLPD  GGEWEEIINT  DDAKYGGSGV  TNLGQVSAED  MEWNGRPYSV  ELRVPPLGCL720
WLRPKED727

Enzyme Prediction      help

EC 2.4.1.18

CAZyme Signature Domains help

Created with Snap3672109145181218254290327363399436472508545581617654690274573GH13123212CBM48
Family Start End Evalue family coverage
GH13 274 573 2.5e-160 0.9933554817275747
CBM48 123 212 1.9e-17 0.8947368421052632

CDD Domains      download full data without filtering help

Created with Snap36721091451812182542903273633994364725085455816176546908725PRK054025726PRK14705105725PRK12313122724PRK1470698724GlgB
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK05402 PRK05402 0.0 8 725 1 724
1,4-alpha-glucan branching protein GlgB.
PRK14705 PRK14705 0.0 5 726 500 1224
glycogen branching enzyme; Provisional
PRK12313 PRK12313 0.0 105 725 9 628
1,4-alpha-glucan branching protein GlgB.
PRK14706 PRK14706 0.0 122 724 26 621
glycogen branching enzyme; Provisional
COG0296 GlgB 0.0 98 724 1 628
1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism].

CAZyme Hits      help

Created with Snap36721091451812182542903273633994364725085455816176546905727VEI15775.1|CBM48|GH13_95727QLF53918.1|CBM48|GH13_95727QQQ58632.1|CBM48|GH13_95727QQC40175.1|CBM48|GH13_95727AMD99459.1|CBM48|GH13_9
Hit ID E-Value Query Start Query End Hit Start Hit End
VEI15775.1 0.0 5 727 20 744
QLF53918.1 0.0 5 727 12 736
QQQ58632.1 0.0 5 727 12 736
QQC40175.1 0.0 5 727 12 736
AMD99459.1 0.0 5 727 12 736

PDB Hits      download full data without filtering help

Created with Snap367210914518121825429032736339943647250854558161765469097243K1D_A87235GQW_A87235GR1_A87235GR0_A87235GR5_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3K1D_A 2.69e-310 9 724 6 721
Crystalstructure of glycogen branching enzyme synonym: 1,4-alpha-D-glucan:1,4-alpha-D-GLUCAN 6-glucosyl-transferase from mycobacterium tuberculosis H37RV [Mycobacterium tuberculosis H37Rv]
5GQW_A 7.27e-248 8 723 25 772
Crystalstructure of branching enzyme W610N mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142],5GQX_A Crystal structure of branching enzyme W610N mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142]
5GR1_A 2.07e-247 8 723 25 772
Crystalstructure of branching enzyme Y500A/D501A mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142],5GR6_A Crystal structure of branching enzyme Y500A/D501A double mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142]
5GR0_A 2.93e-247 8 723 25 772
Crystalstructure of branching enzyme D501A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142]
5GR5_A 1.18e-246 8 723 25 772
Crystalstructure of branching enzyme W610A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142]

Swiss-Prot Hits      download full data without filtering help

Created with Snap367210914518121825429032736339943647250854558161765469011724sp|Q2J6Q9|GLGB_FRACC5722sp|Q0SGR9|GLGB_RHOJR8723sp|Q6AEU4|GLGB_LEIXX6726sp|Q8G5L0|GLGB_BIFLO9725sp|Q73X75|GLGB_MYCPA
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q2J6Q9 0.0 11 724 94 811
1,4-alpha-glucan branching enzyme GlgB OS=Frankia casuarinae (strain DSM 45818 / CECT 9043 / CcI3) OX=106370 GN=glgB PE=3 SV=1
Q0SGR9 5.39e-317 5 722 6 728
1,4-alpha-glucan branching enzyme GlgB OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=glgB PE=3 SV=1
Q6AEU4 1.86e-315 8 723 14 730
1,4-alpha-glucan branching enzyme GlgB OS=Leifsonia xyli subsp. xyli (strain CTCB07) OX=281090 GN=glgB PE=3 SV=1
Q8G5L0 2.15e-315 6 726 1 737
1,4-alpha-glucan branching enzyme GlgB OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=glgB PE=3 SV=1
Q73X75 1.41e-314 9 725 15 731
1,4-alpha-glucan branching enzyme GlgB OS=Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10) OX=262316 GN=glgB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000043 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000303_00276.