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CAZyme Information: MGYG000003440_00366

You are here: Home > Sequence: MGYG000003440_00366

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Anaerobiospirillum succiniciproducens
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Succinivibrionaceae; Anaerobiospirillum; Anaerobiospirillum succiniciproducens
CAZyme ID MGYG000003440_00366
CAZy Family CBM48
CAZyme Description 1,4-alpha-glucan branching enzyme GlgB
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
737 84498.23 5.6421
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003440 3625053 MAG Fiji Oceania
Gene Location Start: 6708;  End: 8921  Strand: +

Full Sequence      Download help

MLIDELNSAR  LAKPFEVLGL  QPNPNGNGFV  LRAWLPGAKS  CRALTLRGKE  EICVLNVINP60
DGLFEKVLED  VKAPFHYVFE  VVYNDSKIEI  VDPYQFRDEA  FYGLNTMYES  PENIYKTLGA120
QLIELEVDGV  KVKGTKFAVY  APSATSVAVI  GDFNFWDGRR  HPMARSLLGH  WVLFVPDLGA180
GQRYKFEIKD  NNGNRLPHKA  DPVGFYHEQY  PSFASIISDQ  TTYEWHDQEW  QKSQQCDKLS240
RPMSIYEVHL  ASWKRKADGS  SLNYRELAKE  LVDYCKEMGY  THIELLPVME  YPFSGSWGYQ300
PTGLFAPTSR  FGGIDDFKFF  VDTCHRNNIG  VILDWVPAHF  PTDAHGLARF  DGTPVYEYED360
PRRGWHPDWN  SLIYDFGRDT  VRNFLVASAL  IWLDYYHIDG  LRVDAVASML  YWDYSRKDGE420
WIPNVNGGNI  NYEAVSFLKW  FNETVYAKYP  GAVTIAEEST  AFTGVSRPTY  TGGLGFGFKW480
NMGWMHDSLE  YMAQDPYFRK  YHHGEMSFSM  IYAYNENFIL  SISHDEVTHG  KHSMLYKMPG540
DEWQQAANLR  SFLAYQYGHP  GKVLNFMGTE  IAQGNEWNHD  AGLDWWLLQY  DKHKGVQALV600
KDLNHFYQQN  EVLWANDYDP  DCFRWLDVSD  AEHSVFAMLR  TLPEKGGNAA  KSGNVKDEIM660
MVSNFTPVPY  VAYRLGVPRP  GTYKVVFNTD  DKKYWGSGYS  TGPESMVASN  ISWQGQYHSL720
VLDLPPLATV  FIKRVGD737

Enzyme Prediction      help

EC 2.4.1.18

CAZyme Signature Domains help

Created with Snap3673110147184221257294331368405442479515552589626663700273573GH13118203CBM48
Family Start End Evalue family coverage
GH13 273 573 2.3e-156 0.9966777408637874
CBM48 118 203 8.8e-16 0.8421052631578947

CDD Domains      download full data without filtering help

Created with Snap367311014718422125729433136840544247951555258962666370061733PRK147053733PRK12568132737PRK14706112733branching_enzym3737PRK05402
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK14705 PRK14705 0.0 61 733 561 1221
glycogen branching enzyme; Provisional
PRK12568 PRK12568 0.0 3 733 15 727
glycogen branching enzyme; Provisional
PRK14706 PRK14706 0.0 132 737 37 624
glycogen branching enzyme; Provisional
TIGR01515 branching_enzym 0.0 112 733 11 618
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. [Energy metabolism, Biosynthesis and degradation of polysaccharides]
PRK05402 PRK05402 0.0 3 737 6 726
1,4-alpha-glucan branching protein GlgB.

CAZyme Hits      help

Created with Snap36731101471842212572943313684054424795155525896266637001737ACQ94289.1|CBM48|GH13_91734QFI53880.1|CBM48|GH13_91734ATL98588.1|CBM48|GH13_91734BBU06269.1|CBM48|GH13_91734BBR41184.1|CBM48|GH13_9
Hit ID E-Value Query Start Query End Hit Start Hit End
ACQ94289.1 0.0 1 737 1 727
QFI53880.1 0.0 1 734 1 725
ATL98588.1 0.0 1 734 1 723
BBU06269.1 0.0 1 734 1 723
BBR41184.1 0.0 1 734 1 723

PDB Hits      download full data without filtering help

Created with Snap3673110147184221257294331368405442479515552589626663700147335GQW_A147335GR5_A147335GR0_A147335GQU_A147335GR2_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5GQW_A 2.99e-239 14 733 41 772
Crystalstructure of branching enzyme W610N mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142],5GQX_A Crystal structure of branching enzyme W610N mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142]
5GR5_A 8.50e-239 14 733 41 772
Crystalstructure of branching enzyme W610A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142]
5GR0_A 1.20e-238 14 733 41 772
Crystalstructure of branching enzyme D501A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142]
5GQU_A 1.70e-238 14 733 41 772
Crystalstructure of branching enzyme from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142],5GQV_A Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142 in complex with maltohexaose [Crocosphaera subtropica ATCC 51142],5GQY_A Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142]
5GR2_A 4.83e-238 14 733 41 772
Crystalstructure of branching enzyme L541A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142],5GR4_A Crystal structure of branching enzyme L541A mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142]

Swiss-Prot Hits      download full data without filtering help

Created with Snap36731101471842212572943313684054424795155525896266637005737sp|Q15VD0|GLGB_PSEA64733sp|Q9KNE8|GLGB_VIBCH2735sp|Q8D4P0|GLGB_VIBVU5732sp|Q6LHN1|GLGB_PHOPR2733sp|Q7MG90|GLGB_VIBVY
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q15VD0 0.0 5 737 6 729
1,4-alpha-glucan branching enzyme GlgB OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=342610 GN=glgB PE=3 SV=1
Q9KNE8 3.61e-285 4 733 15 725
1,4-alpha-glucan branching enzyme GlgB OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=glgB PE=3 SV=2
Q8D4P0 4.41e-285 2 735 1 715
1,4-alpha-glucan branching enzyme GlgB OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=glgB PE=3 SV=1
Q6LHN1 7.47e-284 5 732 2 710
1,4-alpha-glucan branching enzyme GlgB OS=Photobacterium profundum (strain SS9) OX=298386 GN=glgB PE=3 SV=1
Q7MG90 5.85e-283 2 733 1 713
1,4-alpha-glucan branching enzyme GlgB OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=glgB PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000060 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003440_00366.