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CAZyme Information: MGYG000001014_00049

You are here: Home > Sequence: MGYG000001014_00049

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Varibaculum timonense
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum timonense
CAZyme ID MGYG000001014_00049
CAZy Family GH136
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1214 128901.78 5.6314
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001014 1848217 MAG Bangladesh Asia
Gene Location Start: 890;  End: 4534  Strand: +

Full Sequence      Download help

MNLKKLAKAT  GITMLATSLV  ALSQLPAVAA  PVQAEIIPAT  TYYVSAAGND  ANDGKSEDKP60
LKTLDAVNKL  TLHAGDKILL  KRGDVFNNQH  LCISGDKAFK  FNDGTTCAYQ  ADSDGAPLVI120
SAYGEGDKPV  IAANGQGQWK  LDYGLTLGHS  QHYLAKDAVS  STVMLKDAEN  IELSDLEITN180
KRIEDGSGKE  NGCAYNDNCA  LDRTGIAGIA  QNQGTLDHVV  LRNLYVHDVK  GNIYNKHSVN240
GAIYFSSLIA  SDQMKPAADR  TAPGFKPALD  KPEKGYPRFN  DLQIINNRVE  NSGRWGIAAV300
YSAYASVAVD  GRIQIPDEVI  TKYGSTNVVI  SNNFIKNIGG  DAITAMYGYK  PVVESNVATE360
IATQMNTTDY  LFAKDTPGKF  AKNGGRVAAS  IWPWKSKDAV  FRFNEGFNTQ  NADKGNGDGM420
PWDADSGDGT  VYEYNYSANN  SGGTVMFCGD  QAANSTFRFN  IAQNDSLGAL  SPTFWDGGYS480
GKYPNAHVYN  NTFYLKAGSS  ILHPAQAQQG  TMKVENNIFY  NMSDQPRTEA  WNPLGHITWD540
PKDIDGNAKV  AYSHNLYYNY  ANYPASDLNP  VKVSKGSAVL  ADPGKAPSDA  ATDMKARPHY600
FPGLSYAEAD  AKTTVFDGYK  LAANSPAIGK  GKEIVDDNGF  ALGTDFFGRT  ANTFDIGAVS660
TNQKPLPPAT  VTDSAKLVST  TYQVTDGDTV  PSKNGAYKAG  NTIHVPSTEK  SPSTIAEVLS720
NLTVEGKAQI  VDAAGNAQAE  DALVAAGMKL  KITSLDGKVT  SEFPLSIDNV  YSWLDDYTHN780
VQGNVWFGQK  QTGANGKWVN  IDKADPAWPN  WQVDEYYGPG  INGAQLAPTD  RSALHGLLSD840
SPTSAGATAM  AWRAPKTGYI  TFKVKDAAAG  KPAEPFLRQG  DATGGTVTVK  LLVNGIEKRS900
LTLAKKDIRP  DGEFNFTAND  ANALQVSKGD  FVRVVAESTG  TPAQPSMFVS  PTITYIDRTV960
DTEVIPVKPG  TDTGEPDTPT  PGQNPQTDKG  YVEGKVPGFA  LSLAGDKVTG  KVTLPQVEGI1020
EYLVNGAALA  DSYPAGPVVV  TLKAKAGYKL  GESATTEWKF  TVPATPEFAS  DTGKLQIPTT1080
VGVSYDAQNQ  TMAPGKSVTV  TATASDGYSF  AATRAVKWTF  TADQKDDSKP  GTDPEKPGTD1140
PEKPGTVPSD  NPTRPDNGTV  ADGKQKNPNK  PATSVKDKQG  SLVTTGSLAG  IAAIAALTLG1200
AAGMAIVRRR  LKEQ1214

Enzyme Prediction      help

No EC number prediction in MGYG000001014_00049.

CAZyme Signature Domains help

Created with Snap6012118224230336442448554660766772878984991097110311092115340659GH136
Family Start End Evalue family coverage
GH136 40 659 4.2e-135 0.9918533604887984

CDD Domains      download full data without filtering help

Created with Snap60121182242303364424485546607667728789849910971103110921153280363Beta_helix
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 3.69e-04 280 363 9 92
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Created with Snap60121182242303364424485546607667728789849910971103110921153401036ADP35567.1|GH13640957ADO52688.1|GH13640957QTQ17888.1|GH13640957EFR49825.1|GH13640957VEG19581.1|GH136
Hit ID E-Value Query Start Query End Hit Start Hit End
ADP35567.1 1.03e-168 40 1036 68 974
ADO52688.1 7.95e-167 40 957 34 890
QTQ17888.1 1.98e-165 40 957 34 892
EFR49825.1 7.91e-164 40 957 21 877
VEG19581.1 9.24e-164 40 957 34 892

PDB Hits      download full data without filtering help

Created with Snap60121182242303364424485546607667728789849910971103110921153356587V6M_A406595GQC_A406597V6I_A425186KQT_A425186KQS_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
7V6M_A 1.20e-165 35 658 4 574
ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
5GQC_A 4.41e-130 40 659 18 595
Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]
7V6I_A 1.40e-127 40 659 14 607
ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
6KQT_A 7.27e-94 42 518 247 662
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
6KQS_A 5.68e-90 42 518 247 662
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000279 0.999026 0.000162 0.000189 0.000159 0.000147

TMHMM  Annotations      download full data without filtering help

start end
1185 1207