logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003452_00330

You are here: Home > Sequence: MGYG000003452_00330

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bifidobacterium ruminantium
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium ruminantium
CAZyme ID MGYG000003452_00330
CAZy Family GH2
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
904 MGYG000003452_2|CGC4 100588.4 4.501
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003452 2217592 MAG Fiji Oceania
Gene Location Start: 310228;  End: 312942  Strand: -

Full Sequence      Download help

MSHIPSTFAP  LNEGWTLTAV  NPEAAPEALR  ATLAAGIPAT  VPGEATLDLL  NAGLIDDPFD60
GDNENKQQWI  GDVDWRFTCH  FDWHDDGSDR  HDLVAYGLDT  IADIALNGRP  VAFTRNFHCS120
YRWDVRDLLR  NGANELTVTF  TSPVRESDRM  EQARGYYPHT  EHHAFNQIRK  PSYSFGWDWG180
IDVANAGIWR  EIGIDSWSDV  RIASVRPLVD  VTADGTGLLN  VHVEIERAGK  GRVMSPYDSH240
PVRQAVPVHA  EISGFGTNLS  VDGVVAEGRN  ETVLTIAAPE  AKLWWPVGYG  DQPLYDVDVT300
AGDAEEASWS  GHVGFRTVHV  DTRADEIGRP  FQIYVNDVPV  HAHGYNWIPD  DAFISRVSQR360
DYERGIRDLV  ESNSNMVRAW  GGGIYESDEF  YDLCDEYGIM  VWQDFMLACA  AYPEDAETKA420
EVEAEAREHI  TRLSEHASLI  VWNGSNENYV  AYSEWGGYKQ  ALRDDDRKPN  AYGYGEKPWG480
DYYYSELFPS  LLAELDPSRS  AYLPSSPMSF  TKFTGANLDT  DGTMHIWDAW  NRADYTVYAQ540
YTPRFADEFG  YQAPPAWSTL  TGAVHDGKLE  PFGKQMLVHQ  KASGGNYKLA  RGMRSHITPG600
HLDDVSFGGV  VNGKPSDGEH  SWLIPTDNWA  DIEDWHWACQ  LQQAQAMRFG  VEHMRSLEPV660
NAGALIWQLN  DDWPVVSWAA  VDFNGHRKPV  WYASRDFFAP  HLATIQPRVS  EEYRETHSWE720
GVKTANDHFE  LIVLNDTRKA  WKGSWKVERV  NLSGEVLASQ  SFDDVELGAV  SHIGLPLNED780
IVSYGDAGNE  LVVATPSDNA  FARVVFNPAE  IIDQKLAAPA  DAFETSAKAV  EGGVELTVTA840
RSYVRDLFCM  VDKVDAKASV  TEGMVSLLAG  ESVTLHIATD  AVSDPAAFAA  ANVLRSANDL900
KREW904

Enzyme Prediction      help

No EC number prediction in MGYG000003452_00330.

CAZyme Signature Domains help

Created with Snap45901351802262713163614064524975425876326787237688138587777GH2
Family Start End Evalue family coverage
GH2 7 777 1.4e-91 0.6941489361702128

CDD Domains      download full data without filtering help

Created with Snap459013518022627131636140645249754258763267872376881385810700LacZ5447ebgA332452Glyco_hydro_2_C360402SK
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3250 LacZ 3.40e-65 10 700 14 631
Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].
PRK10340 ebgA 3.23e-09 5 447 38 449
cryptic beta-D-galactosidase subunit alpha; Reviewed
pfam02836 Glyco_hydro_2_C 1.83e-06 332 452 7 140
Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.
cd00464 SK 0.006 360 402 55 97
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

CAZyme Hits      help

Created with Snap45901351802262713163614064524975425876326787237688138581904AII75504.1|GH21904AZH70716.1|GH21904AZN74052.1|GH21904BAQ28225.1|GH21904QGM61607.1|GH2
Hit ID E-Value Query Start Query End Hit Start Hit End
AII75504.1 0.0 1 904 1 904
AZH70716.1 0.0 1 904 1 904
AZN74052.1 0.0 1 904 1 910
BAQ28225.1 0.0 1 904 1 909
QGM61607.1 0.0 1 904 1 909

PDB Hits      download full data without filtering help

Created with Snap4590135180226271316361406452497542587632678723768813858348816BYE_A348816BYC_A348816BYI_A348816BYG_A377022VJX_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
6BYE_A 7.78e-115 34 881 30 836
Crystalstructure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri in complex with mannose [Xanthomonas citri pv. citri str. 306],6BYE_B Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri in complex with mannose [Xanthomonas citri pv. citri str. 306]
6BYC_A 7.96e-115 34 881 30 836
Crystalstructure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306]
6BYI_A 5.48e-114 34 881 28 834
Crystalstructure of the acid-base mutant (E477A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306],6BYI_B Crystal structure of the acid-base mutant (E477A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306]
6BYG_A 5.61e-114 34 881 30 836
Crystalstructure of the nucleophile mutant (E575A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306],6BYG_B Crystal structure of the nucleophile mutant (E575A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306]
2VJX_A 2.60e-104 37 702 26 655
Structuraland biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VJX_B Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VL4_A Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VL4_B Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VMF_A Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VMF_B Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VO5_A Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VO5_B Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VOT_A Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VOT_B Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron VPI-5482],2VQT_A Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron],2VQT_B Structural and biochemical evidence for a boat-like transition state in beta-mannosidases [Bacteroides thetaiotaomicron],2VR4_A Transition-state mimicry in mannoside hydrolysis: characterisation of twenty six inhibitors and insight into binding from linear free energy relationships and 3-D structure [Bacteroides thetaiotaomicron VPI-5482],2VR4_B Transition-state mimicry in mannoside hydrolysis: characterisation of twenty six inhibitors and insight into binding from linear free energy relationships and 3-D structure [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      download full data without filtering help

Created with Snap459013518022627131636140645249754258763267872376881385840752sp|Q5B7W2|MANBB_EMENI39743sp|Q0CCA0|MANBB_ASPTN10767sp|Q2TXB7|MANBB_ASPOR10767sp|B8NW36|MANBB_ASPFN41753sp|A1CGA8|MANBB_ASPCL
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q5B7W2 5.43e-85 40 752 31 703
Beta-mannosidase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=mndB PE=1 SV=2
Q0CCA0 9.45e-83 39 743 30 692
Beta-mannosidase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mndB PE=3 SV=2
Q2TXB7 9.62e-83 10 767 8 720
Beta-mannosidase B OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mndB PE=3 SV=3
B8NW36 9.62e-83 10 767 8 720
Beta-mannosidase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=mndB PE=3 SV=1
A1CGA8 2.44e-81 41 753 32 704
Beta-mannosidase B OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mndB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000066 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003452_00330.