CAZyme Information: MGYG000002301_00590

Basic Information

• Species: Staphylococcus warneri
• Lineage: Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus warneri
• CAZyme ID: MGYG000002301_00590
• CAZy Family: GH23
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1864		202947.76	10.9347

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002301	2673052	Isolate	China	Asia

• Gene Location: Start: 561029; End: 566623 Strand: +

Full Sequence      

MADFNLGAEVSLDVDPLKASKQTLEHNLKDINKSLRSQRAEFKKNELSAEQLAEREKSLG
RAVKLQEGLLERRKKDLQSVRDEMSKSNVVTDAQRTKLQSASRAVQQAENQLSNYNRELK
ETEVAYKQFNRSTDQVKNSLGELKNRAKSSEIAFKQSTRSVDSYKDHLTTMNYTISKSKG
NIDLLKKNLREVSNAHGSASRQADKLRNDILKESIAMQIAQGRADELADELKEVEREQRK
VALAGTMMIAGFTGARASVDRIATTLRSFGELTQGIVGEVMATQFANLVPIMGSVVSAGA
GIGGMLTSLAGGAIGLGGAFGIGMGAINAFAGQATYSLKKLEDGELRVTNEVRSYQSALN
GLKSSWDGLIAQNQSAIFNTLTNGIKTANYALRTLNPFLTTTASQIENMSGRMHTWVTSS
QNARTAFSILNNQGTKAFGNLLNGAYHFFDGTVAVFNKLSPLFVWASKGFENMGLSFRRW
ANSVEGSNAINSFVQYTKTNLPIVGRIFANVFSGLFNLFGAFAGHSHNVLLGIESVTEGF
KQWSAQLKKSDGFQQFINYLEKNGPKVWSIVKNISMALWGLIKGMAPVASVTLSLTAAVT
QWLASMTNAHPWIGKLLGSTVALTGAMMLFLKPIFLVKGALTGMRGALLAVTGAETLLGK
QGAFATLGMKRQAVQARISAIATRAWSVATKAAAFATRGLGLAIRFMSGPIGWVITGIGL
LVGAIVYLWKNNETFRNFVIGAWTAIKNTAISVFGFLKPYIVGIWNGIKTASLVVWNLMK
TSATLTWNAIKFAIQNPIQALKNALSFIWNGIKAGALFAWNSIKVGVMAIIGGWLALVRA
NFAMWRTIITGVWNGIKYVSITIWNGIKNGVMAIIRGWIGLVRASFNGLRGFFSAMWNGI
KSVSIAIWNGIKNGVIAIVRALVGNAKRNISTLRSFISGVWNAIKGISIRVWNAIKNGVI
SAIRGLSSGVRKIIGTLRGWIISAWNYIKNKVINLAKALSNGVKRAFNSLWGAVKKIFGA
IRNFAVKTWTYIKNKVISLAKGLYSGVKRAFTGTWNFVKRVFNNIKNFSVKVWNYIKNKV
VSLAKGLYNGVKRNFTVTWNITKSIFGKLRGWLTKTWKNIKNSVVSHARGLWSGVKGTWS
RLKSGTSSTFGRVKSDTISKWKSMKSSVTGLAKGLWSSVRNTFRNMASGLKTLIGRIKSH
INNMVGGVKGGLNKLIGGVNWVAGKLGMDKLPTLKLHTGTTHTQKYVTNGKINQDTFATV
GDKGRGNGPGGFRHEMIRYPNGRTAITPNRDTTAFLPKGSQVYNGAQTHSMLNNHPAFAT
GTLPKFASGTMFNLLGGGKKPKKHKHKDANDSDESLGSKLGNMWGGVKNATSKAVSTGVG
WAKAAGKTASKVIGDVLDYIEKPSKLVEKVFDIFGVGVKTFGIPSGAELPFNMMKGMFGK
LKKGAIDKVKNWLEESGGGDGGYIKYLDNITTPYSPNGPPPGYAFSWPHPGIDLPYKYEP
VYSTISGTARGKEMPGGFGHYIEVIGGALKVIYGHLSKWNIKQGQKVHPGTKLGVSGNTG
ASTGPHLHYEMHRNGKPIDPVKWLKSHNGGGKSGGSRAASAWRPEVIKALRANHLPTSGA
YVNAWIRQIDSESSGNAGAHQGIHDVNSGGNEAQGLVQVTPATFRAFKMAGHGNILNGLD
NLMAGIHYAKSRYGSSMLSVIGHGHGYAKGTNNARKGFANIFEEGGEIMQMHGGETVIPN
DVSIEAFKQIANSDIFARTQSAVYEAISRYADEIRQDKAQKQQEQYRKDMEYQALKEQNN
KLTSLVDKMDTIISSLLNIEDSSERTANKKTVIDKFSHEKEVNSIVDKRERNKVRTSKFK
PRLT

Enzyme Prediction     

No EC number prediction in MGYG000002301_00590.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd13402	LT_TF-like	2.90e-35	1622	1737	1	117	lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
COG5412	COG5412	1.32e-29	898	1313	81	501	Phage-related protein [Mobilome: prophages, transposons].
pfam01551	Peptidase_M23	6.14e-27	1488	1580	2	96	Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.
COG5412	COG5412	3.69e-22	672	1054	153	529	Phage-related protein [Mobilome: prophages, transposons].
COG3953	SLT	6.03e-21	1627	1859	20	232	SLT domain protein [Mobilome: prophages, transposons].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AGZ26280.1	0.0	175	1861	231	1925
AID01516.1	0.0	1	1829	1	1715
AGW43750.1	0.0	1	1830	1	1784
QXV71939.1	0.0	1	1833	1	1807
QSF50925.1	2.59e-226	226	1861	288	1942

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6V8I_AF	4.31e-73	259	747	246	734	ChainAF, Tape Measure Protein, gp57 [Dubowvirus dv80alpha],6V8I_BF Chain BF, Tape Measure Protein, gp57 [Dubowvirus dv80alpha],6V8I_CF Chain CF, Tape Measure Protein, gp57 [Dubowvirus dv80alpha]
5J1L_A	1.85e-13	1489	1585	65	165	Crystalstructure of Csd1-Csd2 dimer I [Helicobacter pylori 26695],5J1L_C Crystal structure of Csd1-Csd2 dimer I [Helicobacter pylori 26695],5J1M_A Crystal structure of Csd1-Csd2 dimer II [Helicobacter pylori 26695],5J1M_C Crystal structure of Csd1-Csd2 dimer II [Helicobacter pylori 26695]
4RNY_A	1.90e-11	1464	1586	195	319	Structureof Helicobacter pylori Csd3 from the orthorhombic crystal [Helicobacter pylori 26695],4RNY_B Structure of Helicobacter pylori Csd3 from the orthorhombic crystal [Helicobacter pylori 26695],4RNZ_A Structure of Helicobacter pylori Csd3 from the hexagonal crystal [Helicobacter pylori 26695]
6UE4_A	2.17e-10	1488	1582	265	361	ShyAEndopeptidase from Vibrio cholerae (Closed form) [Vibrio cholerae O1 biovar El Tor str. N16961],6UE4_B ShyA Endopeptidase from Vibrio cholerae (Closed form) [Vibrio cholerae O1 biovar El Tor str. N16961]
6U2A_A	2.20e-10	1488	1582	262	358	ShyAendopeptidase from Vibrio cholera (open form) [Vibrio cholerae]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q0PDK7	4.95e-28	286	627	84	447	Tail tape measure protein gp18 OS=Bacillus phage SPP1 OX=10724 PE=4 SV=1
P44693	9.09e-14	1470	1581	329	443	Uncharacterized metalloprotease HI_0409 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0409 PE=3 SV=1
P0AFS9	4.63e-10	1470	1611	295	438	Murein DD-endopeptidase MepM OS=Escherichia coli (strain K12) OX=83333 GN=mepM PE=1 SV=1
P0AFT0	4.63e-10	1470	1611	295	438	Murein DD-endopeptidase MepM OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=mepM PE=3 SV=1
P0AFT1	4.63e-10	1470	1611	295	438	Murein DD-endopeptidase MepM OS=Shigella flexneri OX=623 GN=mepM PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000082	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

start	end
309	331
503	525
577	599
612	631
706	728
735	757
816	838
858	880