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CAZyme Information: MGYG000000022_00229

You are here: Home > Sequence: MGYG000000022_00229

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Faecalibacterium prausnitzii_C
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Faecalibacterium; Faecalibacterium prausnitzii_C
CAZyme ID MGYG000000022_00229
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
518 MGYG000000022_1|CGC4 57279.04 5.0463
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000022 3052239 Isolate United Kingdom Europe
Gene Location Start: 245511;  End: 247067  Strand: -

Full Sequence      Download help

MKLSLIRSMT  RSAVFELENG  LCYRPAHPFT  IQLNGETVYT  ACETNVFSLF  SLLPGTPYTV60
AVQAEGETLT  LDFTTEAETF  FVDASRYGLV  ADGTTDNTGK  LQAALSTCPK  GGTVYVPAGR120
YRTSSLFMKS  CTTLYLEKGA  VLLGDNDRTH  YPILPGVIPS  ENEVDEYYLT  GWEGNPLDSF180
AGLLNITQVH  DVVVTGEGTL  DCDAQNGDWW  INQKVKRIAW  RPRAVAAVDS  ENVCLHGITV240
QNSYSWTIHP  IFVKHLDLLN  FNINNPYNAP  NTDGIDPESC  EYIRIIGANI  HVGDDCIAMK300
ASKVFLGMKL  KKSCEHTVIR  NCLLDKGHGG  IVIGSEMSGG  VKDMVVTQCL  MDHTDRGLRV360
KTRRGRGNTA  VIDGLVFRNV  EMRGVKTPFV  INMFYFCDPD  GHSPYVQCRD  AMPVDEYTPK420
LGSLTMEDIV  ATDAQFAGCY  FDGLPEQPIE  RISMKNVTIT  FDPNAEAGQA  AMADNRPNVK480
KLAIYAENVK  EIDLHNVKIT  GYEGERLRFA  NVGHFEED518

Enzyme Prediction      help

No EC number prediction in MGYG000000022_00229.

CAZyme Signature Domains help

Created with Snap255177103129155181207233259284310336362388414440466492106471GH28
Family Start End Evalue family coverage
GH28 106 471 1.6e-70 0.9292307692307692

CDD Domains      download full data without filtering help

Created with Snap25517710312915518120723325928431033636238841444046649274501Pgu1172395Glyco_hydro_2882459PLN0221886395PLN0301077413PLN02188
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.79e-88 74 501 75 532
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 8.44e-27 172 395 41 250
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 6.34e-21 82 459 68 408
polygalacturonase ADPG
PLN03010 PLN03010 2.58e-17 86 395 51 320
polygalacturonase
PLN02188 PLN02188 4.46e-17 77 413 32 331
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Created with Snap2551771031291551812072332592843103363623884144404664921518ATP00558.1|GH281518QIA43717.1|GH281518AXB29658.1|GH281518CBL00656.1|GH281518AXA82452.1|GH28
Hit ID E-Value Query Start Query End Hit Start Hit End
ATP00558.1 0.0 1 518 1 518
QIA43717.1 0.0 1 518 1 518
AXB29658.1 0.0 1 518 1 518
CBL00656.1 0.0 1 518 1 518
AXA82452.1 0.0 1 518 1 518

PDB Hits      download full data without filtering help

Created with Snap255177103129155181207233259284310336362388414440466492874593JUR_A874595OLP_A474282UVE_A894621BHE_A924004C2L_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 3.33e-35 87 459 33 410
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.19e-27 87 459 50 425
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 5.31e-24 47 428 115 531
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1BHE_A 1.33e-21 89 462 18 364
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
4C2L_A 1.08e-08 92 400 26 309
Crystalstructure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Created with Snap255177103129155181207233259284310336362388414440466492223489sp|P27644|PGLR_RHIRD87466sp|A7PZL3|PGLR_VITVI52428sp|P15922|PEHX_DICCH89462sp|P18192|PGLR1_PECCC89462sp|P26509|PGLR2_PECPM
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 2.39e-52 223 489 23 292
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 5.22e-44 87 466 68 431
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 4.69e-26 52 428 115 524
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P18192 1.19e-21 89 462 44 390
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P26509 9.61e-21 89 462 44 390
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000059 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000022_00229.