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CAZyme Information: MGYG000000539_00585

You are here: Home > Sequence: MGYG000000539_00585

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Oribacterium sp004554245
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Oribacterium; Oribacterium sp004554245
CAZyme ID MGYG000000539_00585
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
519 MGYG000000539_6|CGC1 58120.83 4.9301
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000539 2303957 MAG Fiji Oceania
Gene Location Start: 54693;  End: 56252  Strand: -

Full Sequence      Download help

MKFKIIWKSS  RAVCIELVEE  GIVYTDNYTV  FIDGEPMLTS  DRVVQSIYGL  KPDTEYRLTL60
SRGDQTSEET  TFQTEPEFVT  LNVRDFGARG  DDVHNDTLAI  QAAILSCPPH  SRVYVPEGIY120
KVSSLFMKSG  IIFELGKGAV  LSAYTDRSYF  PILPGLIQSY  DEASEYNLAS  WEGNPLDSFA180
SIITGIGVSD  VTICGEGTIE  GNATYENWWE  GEGRKKTGGA  FRPRSIFLNR  CKDVTIQGIS240
IKNSPAWTVH  PYFSENIRIL  DITLNNPKVS  PNTDGIDPES  VKNLEIVGVH  FSLGDDCIAI300
KSGKRYMGHT  YVTPSENIEI  RQCHMKYGHG  SVTLGSEISA  GVKNLYCHDC  IFEDTDRGLR360
IKTRRGRGKE  SIIDNIRFEN  IRMDGVLTPF  VLNSFYWCCD  PDGKSEYVRC  KEPLPVDDRT420
PTVGRISFKN  IEARNCHVAA  TFMYGLPEAK  VEELSFENVH  ISFAEDPKPD  YPAMMADVEP480
CTRKGAFIRN  CKKLVLKEVR  IEGADGDAFD  LDGIDLLER519

Enzyme Prediction      help

No EC number prediction in MGYG000000539_00585.

CAZyme Signature Domains help

Created with Snap255177103129155181207233259285311337363389415441467493162466GH28
Family Start End Evalue family coverage
GH28 162 466 9.2e-74 0.7661538461538462

CDD Domains      download full data without filtering help

Created with Snap25517710312915518120723325928531133736338941544146749374486Pgu1170386Glyco_hydro_2881400PLN0279382396PLN0301063402PLN02218
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 9.66e-95 74 486 76 513
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.33e-33 170 386 40 239
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 1.34e-26 81 400 53 342
Probable polygalacturonase
PLN03010 PLN03010 2.42e-25 82 396 48 320
polygalacturonase
PLN02218 PLN02218 2.66e-24 63 402 53 359
polygalacturonase ADPG

CAZyme Hits      help

Created with Snap2551771031291551812072332592853113373633894154414674931517ABX43097.1|GH281519BCJ96409.1|GH281515CBL11994.1|GH281515VCV21973.1|GH281515CBL09361.1|GH28
Hit ID E-Value Query Start Query End Hit Start Hit End
ABX43097.1 5.33e-226 1 517 1 515
BCJ96409.1 2.47e-219 1 519 1 516
CBL11994.1 1.63e-210 1 515 1 514
VCV21973.1 2.31e-210 1 515 1 514
CBL09361.1 2.31e-210 1 515 1 514

PDB Hits      download full data without filtering help

Created with Snap255177103129155181207233259285311337363389415441467493813763JUR_A813815OLP_A923961BHE_A464202UVE_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 2.88e-42 81 376 28 347
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 2.62e-35 81 381 45 355
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 9.69e-27 92 396 21 314
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
2UVE_A 7.12e-21 46 420 116 523
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Created with Snap255177103129155181207233259285311337363389415441467493211487sp|P27644|PGLR_RHIRD85479sp|A7PZL3|PGLR_VITVI92396sp|P18192|PGLR1_PECCC92396sp|P26509|PGLR2_PECPM81396sp|P43212|PGLR2_CRYJA
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 1.82e-51 211 487 10 287
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 2.11e-39 85 479 67 441
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P18192 1.65e-26 92 396 47 340
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P26509 7.62e-26 92 396 47 340
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
P43212 3.11e-25 81 396 59 346
Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000041 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000539_00585.