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CAZyme Information: MGYG000000650_00243

You are here: Home > Sequence: MGYG000000650_00243

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Enterocloster;
CAZyme ID MGYG000000650_00243
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
533 MGYG000000650_4|CGC1 59117.24 5.6859
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000650 2883736 MAG Germany Europe
Gene Location Start: 24482;  End: 26083  Strand: +

Full Sequence      Download help

MDFKIIYTAG  RCAVFETADG  GIYHTKERYQ  LLITRTKTGS  DSSLEKESPD  SRKQEEISRV60
ITPVYGLEPD  TTYEAVLFLG  ETEAARLTFS  TKEESVTLNV  KDFGAAGDGV  KDDTLAIQSA120
IMACPPKGRV  LIPAGTYSFV  CLFLKDSIDI  ELAEGAELSA  VTDRTRFPYY  PGMVERTDGQ180
GQLNLGTWEG  DPQTMFCGLI  TGTSVKHVNI  YGKGTLNGNT  SHDNWWHDCK  KMVIAWRPRA240
VFLNHCEDIS  LVGITVKNSP  SWTLHPYFSN  HLRFLALNVL  NPKDSHNTDG  LDPESCNDVE300
IAGVHFSVGD  DCIAVKSGKI  YMGKTYKTPC  ENVMIRQCSM  NDGHGSVVIG  SEIGAGVKNL360
TIKDCCFKDT  DRGLRIKTRR  GRGKDSVVDQ  VTFENIRMDG  VLTPFVVNCF  YFCDPDGKTE420
YVQTRKALPV  DERTPEIREL  VFKNIDAKNA  HYAAVCAYGL  PEQKIGRLSF  ENISVSYAKD480
VEPQTPAMMC  DLPPMAKAGI  FVRNVRELEL  KNVRIEGCIG  NEIDAEGVDR  IQK533

Enzyme Prediction      help

No EC number prediction in MGYG000000650_00243.

CAZyme Signature Domains help

Created with Snap265379106133159186213239266293319346373399426453479506188481GH28
Family Start End Evalue family coverage
GH28 188 481 2.6e-70 0.7784615384615384

CDD Domains      download full data without filtering help

Created with Snap26537910613315918621323926629331934637339942645347950690465Pgu1200479Glyco_hydro_2872414PLN0279395444PLN0300392465PLN02188
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.33e-90 90 465 75 466
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 9.13e-29 200 479 48 307
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 1.19e-28 72 414 30 342
Probable polygalacturonase
PLN03003 PLN03003 1.72e-26 95 444 21 326
Probable polygalacturonase At3g15720
PLN02188 PLN02188 3.59e-26 92 465 31 367
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Created with Snap2653791061331591862132392662933193463733994264534795061528QIX91771.1|GH281528QQR03573.1|GH281528ANU47529.1|GH281531QRP36832.1|GH281531ASN98356.1|GH28
Hit ID E-Value Query Start Query End Hit Start Hit End
QIX91771.1 2.63e-221 1 528 1 515
QQR03573.1 3.73e-221 1 528 1 515
ANU47529.1 3.73e-221 1 528 1 515
QRP36832.1 8.68e-220 1 531 1 518
ASN98356.1 8.68e-220 1 531 1 518

PDB Hits      download full data without filtering help

Created with Snap265379106133159186213239266293319346373399426453479506984813JUR_A1003965OLP_A1144111BHE_A644502UVE_A942594MR0_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 6.02e-33 98 481 28 403
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 4.17e-30 100 396 47 355
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 2.60e-24 114 411 26 314
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
2UVE_A 1.07e-22 64 450 117 532
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
4MR0_A 2.53e-06 94 259 112 264
Crystalstructure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6],4MR0_B Crystal structure of PfbA, a surface adhesin of Streptococcus pneumoniae [Streptococcus pneumoniae R6]

Swiss-Prot Hits      download full data without filtering help

Created with Snap265379106133159186213239266293319346373399426453479506230501sp|P27644|PGLR_RHIRD102478sp|A7PZL3|PGLR_VITVI95444sp|Q9LW07|PGLR3_ARATH114411sp|P18192|PGLR1_PECCC114411sp|P26509|PGLR2_PECPM
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 1.52e-54 230 501 14 287
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 5.54e-34 102 478 67 427
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q9LW07 2.77e-28 95 444 21 326
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
P18192 5.27e-25 114 411 52 340
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P26509 1.97e-23 114 411 52 340
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000048 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000650_00243.