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CAZyme Information: MGYG000000964_00008

You are here: Home > Sequence: MGYG000000964_00008

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola salanitronis
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola salanitronis
CAZyme ID MGYG000000964_00008
CAZy Family GH28
CAZyme Description Exo-poly-alpha-D-galacturonosidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
462 MGYG000000964_1|CGC1 51349.4 6.867
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000964 3100012 MAG Denmark Europe
Gene Location Start: 6964;  End: 8352  Strand: +

Full Sequence      Download help

MKRHLLIFTL  ALLGFVSGSA  NPADDMRIMK  RDSILAQITG  ATIPEKEWLI  TSFGAKGDGK60
KDCKPAFDKA  MKRAAKSGGA  HIVVPAGEYK  LNGPIHFVSN  VCLELQEGAV  LKFAPEPEYY120
LPLVKTSWEG  TFLQNYSPFI  YGYQLENISI  IGKGTIDGNA  GSTFATWKSQ  QKKGQQLSRD180
MNHNETPVEE  RNFGEGYYLR  PQLIQFFDCK  NITLEGVFIT  NSPFWCIHLL  KSENIICRGL240
RYDAKLVNND  GIDPEFTRNL  LIENIEFNNG  DDNVAIKCGR  DNDGWTTARP  SENIIIRNCK300
FKGLHGVVLG  SEMSAGVQNV  FIENCTYGGY  CKRGIYIKTN  PDRGGFIRNI  YVNNCRFGEV360
EDLFYATSMY  AGEGMDNTHF  TEVHDIYVKD  VTCQKASAAA  LVLQGTTVKP  IYNVRFENVN420
VDQAGIGLSF  SNTEDIILKN  CNLGGYVGVP  STASAKDNIF  NK462

Enzyme Prediction      help

No EC number prediction in MGYG000000964_00008.

CAZyme Signature Domains help

Created with Snap2346699211513816118420723125427730032334636939241543874425GH28
Family Start End Evalue family coverage
GH28 74 425 4.3e-77 0.92

CDD Domains      download full data without filtering help

Created with Snap2346699211513816118420723125427730032334636939241543832354Pgu150377PLN03003147422Glyco_hydro_2850442PLN0221850448PLN02188
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 6.91e-72 32 354 67 392
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03003 PLN03003 1.22e-16 50 377 26 308
Probable polygalacturonase At3g15720
pfam00295 Glyco_hydro_28 8.71e-16 147 422 54 304
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 6.21e-15 50 442 70 431
polygalacturonase ADPG
PLN02188 PLN02188 1.82e-14 50 448 39 396
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Created with Snap234669921151381611842072312542773003233463693924154381462ADY35504.1|GH2824462AND21958.1|GH283462AII62903.1|GH283462QUT83816.1|GH283462QJR67967.1|GH28
Hit ID E-Value Query Start Query End Hit Start Hit End
ADY35504.1 0.0 1 462 1 462
AND21958.1 3.51e-287 24 462 5 443
AII62903.1 5.64e-287 3 462 7 465
QUT83816.1 5.64e-287 3 462 7 465
QJR67967.1 5.64e-287 3 462 7 465

PDB Hits      download full data without filtering help

Created with Snap23466992115138161184207231254277300323346369392415438323913JUR_A444405OLP_A462534MXN_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 8.32e-88 32 391 12 381
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.85e-87 44 440 41 445
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
4MXN_A 1.11e-09 46 253 20 205
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]

Swiss-Prot Hits      download full data without filtering help

Created with Snap2346699211513816118420723125427730032334636939241543850424sp|A7PZL3|PGLR_VITVI32440sp|P15922|PEHX_DICCH50442sp|Q8RY29|ADPG2_ARATH50421sp|P43212|PGLR2_CRYJA209370sp|P27644|PGLR_RHIRD
Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 3.72e-34 50 424 65 427
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 2.46e-19 32 440 137 572
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
Q8RY29 1.47e-15 50 442 70 431
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2
P43212 3.51e-15 50 421 61 400
Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1
P27644 5.96e-15 209 370 30 196
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000577 0.998716 0.000199 0.000187 0.000159 0.000150

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000964_00008.