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CAZyme Information: MGYG000001000_00056

You are here: Home > Sequence: MGYG000001000_00056

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA4716 sp900556575
Lineage Bacteria; Firmicutes_A; Clostridia; Monoglobales_A; UBA1381; UBA4716; UBA4716 sp900556575
CAZyme ID MGYG000001000_00056
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
419 47616.67 4.7878
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001000 2124642 MAG China Asia
Gene Location Start: 19480;  End: 20739  Strand: -

Full Sequence      Download help

MPYDRFFPDG  TPIDPWFMNN  LAVTDGIPTW  RDTTYSLTDY  GIYDDGKIYT  NEIQALIDLA60
AEKGGGIIIV  PPGTYLTGSL  FFKQGVNLYV  QSGGVLKGSD  DISDYPILET  RMEGETCKYF120
AALINVDNVD  GFTINGNGII  DGNGLRSWRA  FWLRRQWNPE  CTNKDEQRPR  LIYISNSSNV180
TIANVTLQNS  HYWTTHIYKC  NHVRYLNCNI  FSPSYPIKAP  STDAIDIDVC  TDVLIKGCRL240
EVNDDSVVLK  GGKGPWADKL  PENGSNERII  IEGCTYGFCH  GCLTCGSESV  HNRNIIFRNC300
TVEKGLNLLW  LKMRPDTPQH  YEYITVENIS  GRIDNFININ  PWTQFYDLKD  RKDVPLSYAN360
NITMKNCEIS  CIRFFDVKPD  ENQYKLSDFV  FENLKIHAVY  DDFDTSAIDG  FTVNNVNVK419

Enzyme Prediction      help

EC 3.2.1.-

CAZyme Signature Domains help

Created with Snap2041628310412514616718820923025127229331433535637739863400GH28
Family Start End Evalue family coverage
GH28 63 400 5.4e-59 0.9138461538461539

CDD Domains      download full data without filtering help

Created with Snap2041628310412514616718820923025127229331433535637739832419Pgu1118330Glyco_hydro_2833252PLN0221835330PLN0301032329PLN02188
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.32e-41 32 419 80 449
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 8.46e-15 118 330 42 240
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 1.55e-13 33 252 66 272
polygalacturonase ADPG
PLN03010 PLN03010 6.43e-12 35 330 47 306
polygalacturonase
PLN02188 PLN02188 4.36e-11 32 329 34 305
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Created with Snap204162831041251461671882092302512722933143353563773985418AVM67897.1|GH283419QNM03706.1|GH283410ACR72869.1|GH287419ALK82912.1|GH287419QDO69594.1|GH28
Hit ID E-Value Query Start Query End Hit Start Hit End
AVM67897.1 1.86e-213 5 418 10 420
QNM03706.1 4.10e-208 3 419 8 420
ACR72869.1 1.02e-190 3 410 5 409
ALK82912.1 5.11e-187 7 419 22 431
QDO69594.1 6.75e-187 7 419 22 431

PDB Hits      download full data without filtering help

Created with Snap20416283104125146167188209230251272293314335356377398303635OLP_A284013JUR_A361542UVE_A454191BHE_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 1.94e-31 30 363 40 386
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 4.29e-25 28 401 21 420
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
2UVE_A 1.60e-11 36 154 158 276
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1BHE_A 1.70e-10 45 419 21 375
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Created with Snap2041628310412514616718820923025127229331433535637739831252sp|A7PZL3|PGLR_VITVI46320sp|Q2UBD8|XGHA_ASPOR46320sp|B8NPS8|XGHA_ASPFN16352sp|Q9LW07|PGLR3_ARATH45419sp|P26509|PGLR2_PECPM
Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 8.70e-20 31 252 59 279
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
Q2UBD8 1.86e-12 46 320 43 294
Probable endo-xylogalacturonan hydrolase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=xghA PE=3 SV=1
B8NPS8 7.87e-12 46 320 43 294
Probable endo-xylogalacturonan hydrolase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=xghA PE=3 SV=1
Q9LW07 3.87e-11 16 352 6 313
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
P26509 1.03e-09 45 419 47 401
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000036 0.000021 0.000001 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001000_00056.