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CAZyme Information: MGYG000001160_00447
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | CAG-274 sp000432155 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; CAG-274; CAG-274; CAG-274 sp000432155 | |||||||||||
| CAZyme ID | MGYG000001160_00447 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | Exo-poly-alpha-D-galacturonosidase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 18172; End: 19524 Strand: - | |||||||||||
Full Sequence Download help
| MEKTDFKVIL PIFKNNKYFI TDFGAVNDGY TNNSKAIEDT INHCSSNGGG KVIIPKGLWF | 60 |
| TGPIELKSNV DLHLERGAIL HFSNNPKDYP LINTNFEGYF MYRCKSPIYG KDLENVAITG | 120 |
| YGVIDGNGDN WRPIKHFKMT EKVWAKLVSQ GGAIDNSGKE EILWPSETNK EANKAFLDNY | 180 |
| LLYKDKETCE KYHSFLRPAL FNLTRCKNVL LDGVTFRNSP AWCVHPWLCE NITIQNVHIQ | 240 |
| NPWYAQNGDG LDLDCCKNAH ILNSTFDVGD DAICMKSGKN EDGRKLGVST ENVLIKNCTV | 300 |
| YHGHGGFVAG SEMSGGLKNI FVEDCTFIGT DIGLRFKSCL GRGGIVENIY CKNINMLNIK | 360 |
| NEAIAFNMGY DMDTKAGQEI SPEEIPEFKN IFMENIVCNG AKTPISISGL KAMPIHHIYL | 420 |
| KNISIQTNGN IEIENAENIS QENINIIKEI | 450 |
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 42 | 437 | 5.8e-86 | 0.9446153846153846 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 3.81e-92 | 20 | 372 | 85 | 417 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| PLN02218 | PLN02218 | 8.53e-22 | 20 | 431 | 70 | 420 | polygalacturonase ADPG |
| PLN03003 | PLN03003 | 6.59e-21 | 9 | 427 | 14 | 359 | Probable polygalacturonase At3g15720 |
| pfam00295 | Glyco_hydro_28 | 1.36e-19 | 44 | 425 | 1 | 303 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN03010 | PLN03010 | 2.69e-15 | 201 | 364 | 160 | 315 | polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AKD03742.1 | 1.84e-165 | 7 | 449 | 56 | 510 |
| QCK13288.1 | 6.39e-163 | 7 | 449 | 57 | 510 |
| ALJ00095.1 | 8.00e-159 | 13 | 449 | 73 | 520 |
| AKQ45078.1 | 4.55e-158 | 10 | 449 | 65 | 520 |
| ASB51022.1 | 1.16e-157 | 11 | 449 | 48 | 494 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JUR_A | 2.50e-79 | 11 | 425 | 21 | 405 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 5OLP_A | 3.05e-78 | 12 | 444 | 39 | 446 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 2UVE_A | 1.10e-41 | 20 | 425 | 159 | 561 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
| 1BHE_A | 6.85e-21 | 34 | 436 | 26 | 372 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 4MXN_A | 3.98e-14 | 13 | 126 | 17 | 121 | Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7PZL3 | 5.16e-49 | 20 | 425 | 65 | 424 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| P15922 | 6.46e-39 | 20 | 417 | 154 | 544 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
| P27644 | 8.41e-31 | 202 | 373 | 26 | 199 | Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1 |
| Q9LW07 | 4.14e-23 | 10 | 427 | 15 | 359 | Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1 |
| P18192 | 9.58e-22 | 34 | 436 | 52 | 398 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000057 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |