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CAZyme Information: MGYG000001731_00216

You are here: Home > Sequence: MGYG000001731_00216

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Collinsella sp900751665
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp900751665
CAZyme ID MGYG000001731_00216
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
531 MGYG000001731_8|CGC1 57931.36 4.6797
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001731 1951311 MAG Sweden Europe
Gene Location Start: 15820;  End: 17415  Strand: +

Full Sequence      Download help

METNVIWRNA  RAAVIELDDG  GYFTCADTWE  IFVNDEPAGT  TNTVETYVDG  LTPGKRNLVR60
FVCGERELSV  GVTTPAEPFT  INVRDCGAKG  DAEHDDTTNI  QAAIMACPKG  GRVLIPAGSY120
RIKSLFLKSN  INIELAEGAV  LLARHDRAAL  AYIPGTVTGN  EGAGYAGTDM  LPLGRWEGES180
FSTYCSTFTG  LGVHDVCIYG  RGAIDGQTDF  AEDNWWNKDF  KNIFRPEEGR  EVARPRMIFL240
SECQNVSLAG  FIVRNSPAWN  IHPVLCEHVD  ALCLSIEGPK  NSHNTDGFDP  ESCGFVRILG300
CQFSVGDDCI  AIKSGKLGIE  PELRPATHDV  LISHCYMHDG  HGAVVLGSEA  AGGIKDLTVS360
KCLFERTDRG  LRVKTRRGRG  KDAVNEGITF  EHIRMDEVLT  PFVVNSFYFC  DKDGKTDYVQ420
SRETLPVDDR  TPGFGATTFC  DIEATNCHAA  AAYITGLPES  KVTRLTFQDV  HVTFAPDAEP480
FVPAMACGVE  PMVCQGIIAQ  NVKVLDLQNV  VIEGQDGEEL  QLQNVDKVVR  S531

Enzyme Prediction      help

No EC number prediction in MGYG000001731_00216.

CAZyme Signature Domains help

Created with Snap265379106132159185212238265292318345371398424451477504105478GH28
Family Start End Evalue family coverage
GH28 105 478 5.1e-66 0.9230769230769231

CDD Domains      download full data without filtering help

Created with Snap26537910613215918521223826529231834537139842445147750482462Pgu173417PLN02218188414Glyco_hydro_28174428PLN0300382438PLN03010
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 6.92e-96 82 462 84 466
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02218 PLN02218 2.35e-21 73 417 60 363
polygalacturonase ADPG
pfam00295 Glyco_hydro_28 3.56e-21 188 414 48 255
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 2.62e-20 174 428 97 318
Probable polygalacturonase At3g15720
PLN03010 PLN03010 1.69e-19 82 438 48 348
polygalacturonase

CAZyme Hits      help

Created with Snap2653791061321591852122382652923183453713984244514775041531QIA34431.1|GH281531ATP54717.1|GH281530QUC03565.1|GH281528QOL31033.1|GH281528QOL34309.1|GH28
Hit ID E-Value Query Start Query End Hit Start Hit End
QIA34431.1 0.0 1 531 1 531
ATP54717.1 0.0 1 531 1 531
QUC03565.1 6.06e-281 1 530 1 529
QOL31033.1 1.09e-235 1 528 1 526
QOL34309.1 2.20e-235 1 528 1 526

PDB Hits      download full data without filtering help

Created with Snap265379106132159185212238265292318345371398424451477504653803JUR_A833805OLP_A744222UVE_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 1.45e-38 65 380 11 335
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 8.79e-31 83 380 47 344
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 5.70e-26 74 422 150 514
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Created with Snap265379106132159185212238265292318345371398424451477504236506sp|P27644|PGLR_RHIRD85523sp|A7PZL3|PGLR_VITVI43422sp|P15922|PEHX_DICCH81408sp|P49063|PGLR2_ARATH71427sp|P48978|PGLR_MALDO
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 1.66e-58 236 506 23 295
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 1.55e-34 85 523 67 481
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 2.20e-26 43 422 124 507
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
P49063 1.12e-20 81 408 70 353
Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2
P48978 9.68e-20 71 427 88 400
Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000042 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001731_00216.