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CAZyme Information: MGYG000004360_00435
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; RFN20; CAG-288; UBA7642; | |||||||||||
| CAZyme ID | MGYG000004360_00435 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 17794; End: 19143 Strand: + | |||||||||||
Full Sequence Download help
| MMTATMVKMT SAVAAKTMSR MSDTSFLEKD GKTLLTAKLQ ALLDEADEFV FLKGDYFSGP | 60 |
| LFLHSDMEVK FEAGARIHLI DDESMFFKIP TRIAGIDMEG YPALLNLIDV RNVVLSGHGE | 120 |
| VIGHGSKWYR KYWGDDKKGG MRKEYDAKGL RFACDYDCSR PKNILVQNSE DVNISDLTLR | 180 |
| DSPFWNLHVL YSKNIVLDGL CILADDPDGP STDGIDIDSS QDVEISHCSI STNDDCISLK | 240 |
| SGRDQDGIDR GIPTKHVHIH DCSILHGYGI SIGSELSAGI EDVLVENVSF SMSDCGFRIK | 300 |
| SSKNRKGYVR NVLMRHVSLK DVRYPFYCYL DWNRMYNANV LPEDYKGVIP PYWKKLLACT | 360 |
| DPMIKDTCVE NLSFEDVSIS YQETPASESC LYTFNGFENG VMAKIRFSDI RGVAGEYGTF | 420 |
| ANCRDVVHEK EDVRILHEDR TVPGSFDNR | 449 |
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 48 | 389 | 2.4e-63 | 0.9292307692307692 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 1.92e-44 | 30 | 328 | 93 | 404 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 9.90e-26 | 55 | 333 | 14 | 254 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN03003 | PLN03003 | 1.00e-22 | 109 | 325 | 111 | 294 | Probable polygalacturonase At3g15720 |
| PLN02218 | PLN02218 | 3.39e-19 | 109 | 328 | 154 | 356 | polygalacturonase ADPG |
| PLN03010 | PLN03010 | 4.43e-16 | 166 | 325 | 162 | 313 | polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CCV64961.1 | 4.70e-112 | 24 | 449 | 6 | 435 |
| QXG54031.1 | 2.92e-94 | 30 | 433 | 14 | 415 |
| AWP33974.1 | 3.01e-94 | 30 | 433 | 14 | 415 |
| QNQ58139.1 | 3.01e-94 | 30 | 433 | 14 | 415 |
| QPG26546.1 | 4.26e-94 | 30 | 433 | 14 | 415 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JUR_A | 2.10e-28 | 30 | 312 | 38 | 341 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 5OLP_A | 2.16e-21 | 54 | 318 | 84 | 356 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 2UVE_A | 7.19e-20 | 30 | 424 | 167 | 586 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
| 1BHE_A | 1.51e-18 | 22 | 340 | 13 | 322 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 1NHC_A | 1.21e-08 | 114 | 322 | 72 | 254 | Structuralinsights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7PZL3 | 2.36e-35 | 30 | 327 | 73 | 366 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| Q9LW07 | 2.74e-21 | 109 | 325 | 111 | 294 | Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1 |
| O22818 | 4.44e-21 | 162 | 402 | 154 | 392 | Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1 |
| P26509 | 1.03e-17 | 22 | 340 | 39 | 348 | Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1 |
| P18192 | 1.03e-17 | 56 | 340 | 78 | 348 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000023 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |