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CAZyme Information: MGYG000004838_00742

You are here: Home > Sequence: MGYG000004838_00742

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species RUG023 sp900315435
Lineage Bacteria; Spirochaetota; Spirochaetia; Sphaerochaetales; Sphaerochaetaceae; RUG023; RUG023 sp900315435
CAZyme ID MGYG000004838_00742
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
283 31314.6 4.5848
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004838 1853088 MAG China Asia
Gene Location Start: 2187;  End: 3038  Strand: -

Full Sequence      Download help

MLAGKELVWF  PTETSYQGAL  RLASGKGEDD  LQSAQSSWDF  YRPVLVDLKH  SRQVLLQGVT60
FTDSPAWCIH  TYFCEDVTVD  GIQVKNAYWA  QNGDGIDVES  CRNVEIKDSV  FETGDDAICL120
KSGKNAQARK  TPGPCELVWI  HDCTVFQGHG  GFVIGSEMSR  GVRDILVQRC  LFLATDVGVR180
VKSALGRGGV  VEDIDIQDIR  MVGIKHESII  LTMGYALNSI  TMDEQPVQES  EEDIPLFRDI240
HMDGMCFLGQ  QAKLRIVPLP  GRDDTIQRIT  VNGTLYNGAV  LVD283

Enzyme Prediction      help

No EC number prediction in MGYG000004838_00742.

CAZyme Signature Domains help

Created with Snap1428425670849911312714115516918319821222624025426835248GH28
Family Start End Evalue family coverage
GH28 35 248 1.1e-56 0.5846153846153846

CDD Domains      download full data without filtering help

Created with Snap1428425670849911312714115516918319821222624025426842205Pgu156215Glyco_hydro_2826210PLN0300356210PLN0301074210PLN02793
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 9.93e-52 42 205 237 399
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 2.77e-20 56 215 98 250
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 1.56e-14 26 210 118 297
Probable polygalacturonase At3g15720
PLN03010 PLN03010 1.95e-14 56 210 170 316
polygalacturonase
PLN02793 PLN02793 5.92e-14 74 210 208 336
Probable polygalacturonase

CAZyme Hits      help

Created with Snap142842567084991131271411551691831982122262402542681282QSI03288.1|GH288273QNM02031.1|GH288276ACR71465.1|GH288252ABX42928.1|GH286260QKS58204.1|GH28
Hit ID E-Value Query Start Query End Hit Start Hit End
QSI03288.1 7.93e-206 1 282 158 439
QNM02031.1 6.32e-110 8 273 167 432
ACR71465.1 1.24e-101 8 276 167 435
ABX42928.1 6.71e-79 8 252 160 408
QKS58204.1 6.86e-70 6 260 176 433

PDB Hits      download full data without filtering help

Created with Snap14284256708499113127141155169183198212226240254268402793JUR_A81945OLP_A262282UVE_A432131BHE_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 7.44e-36 40 279 187 413
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 4.79e-25 8 194 161 350
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A 7.71e-19 26 228 314 514
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1BHE_A 1.56e-08 43 213 151 313
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Created with Snap1428425670849911312714115516918319821222624025426850205sp|P27644|PGLR_RHIRD40205sp|A7PZL3|PGLR_VITVI42228sp|P15922|PEHX_DICCH42241sp|Q9FY19|PGLR2_JUNAS39225sp|Q7M1E7|PGLR2_CHAOB
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 4.84e-25 50 205 31 187
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 4.64e-24 40 205 196 362
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P15922 1.01e-20 42 228 323 507
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1
Q9FY19 2.44e-13 42 241 183 372
Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1
Q7M1E7 6.00e-13 39 225 179 356
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000066 0.000002 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004838_00742.