logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000000303_00323

You are here: Home > Sequence: MGYG000000303_00323

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Varibaculum cambriense_A
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Varibaculum; Varibaculum cambriense_A
CAZyme ID MGYG000000303_00323
CAZy Family GH35
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
683 MGYG000000303_3|CGC1 76664.72 4.6251
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000303 2213433 MAG Sweden Europe
Gene Location Start: 5796;  End: 7847  Strand: +

Full Sequence      Download help

MEKQTDNRPV  SVGKSAFKVD  GETVSLYGGA  VHYWRLDRDK  WDQILESVKG  MGFNMISIYI60
PWEIHEVEKG  VFDFSGNKDI  DAFLTLCEEK  DFRVIVRPGP  QINSELTWFG  YPKRILENER120
LQMRNAKGGR  TVLTQVPKPI  PAVNYAADEF  YEETALWYDA  ICEILARHCY  PKGGIVAAQV180
DNEMAYFFCI  NAYAADYSEE  SLAQYRTFLL  DKYGDLASIN  KAYGTSYGSE  GEIDPPRRFE240
GKDKHDIPVL  ADWIEYREQY  LIISMDRLAD  MMRERGLDQI  ALFHNYPHPL  GPGGAASGFT300
TPFNIAKLEE  KLDFVGFDIY  SRKELYSHVK  TVGSYVVGTS  RFPYIPEFIA  GVWPWYLNPG360
EIYDEEFVTK  AALMQGIKGF  SRYMLVERDR  WLDSPIRRDG  RVREDHEKMF  SNANRMQSEN420
SFTSLRRDAK  VLLLANREYD  RLEAASVLVS  FPGDFLETPS  GFSEYANPLT  ISEDNLGFDA480
PVQLEKSKAF  GACFEALSAG  GHDFVISDTD  LDPARWGERS  IIVLPTLDYL  DAKIQQALVD540
FVAGGGCAVV  GPKLPELDSL  MNPCTILKDA  VESGKGKWFV  VKSGDDAASM  LDKACAAADV600
AAVSKSDSRL  DVVVHVDQSD  DKRRVVFVAN  PTAEAIDTRI  ELPFEIEKAT  ELWSGQPGTV660
QGSQLMASMP  AYSINVYDCS  LKN683

Enzyme Prediction      help

No EC number prediction in MGYG000000303_00323.

CAZyme Signature Domains help

Created with Snap346810213617020423927330734137540944347851254658061464818196GH35
Family Start End Evalue family coverage
GH35 18 196 2.9e-46 0.5146579804560261

CDD Domains      download full data without filtering help

Created with Snap346810213617020423927330734137540944347851254658061464816193Glyco_hydro_3517263GanA37320Glyco_hydro_4210112PLN03059503580A4_beta-galactosidase_middle_domain
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01301 Glyco_hydro_35 4.19e-40 16 193 1 159
Glycosyl hydrolases family 35.
COG1874 GanA 8.17e-21 17 263 8 245
Beta-galactosidase GanA [Carbohydrate transport and metabolism].
pfam02449 Glyco_hydro_42 2.65e-18 37 320 8 262
Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
PLN03059 PLN03059 3.23e-10 10 112 30 132
beta-galactosidase; Provisional
cd03143 A4_beta-galactosidase_middle_domain 5.33e-04 503 580 43 115
A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.

CAZyme Hits      help

Created with Snap34681021361702042392733073413754094434785125465806146484681QUC14854.1|GH354681AFN45751.1|GH354681QUC10457.1|GH354681QCT37201.1|GH354681VEJ57903.1|GH35
Hit ID E-Value Query Start Query End Hit Start Hit End
QUC14854.1 0.0 4 681 3 680
AFN45751.1 0.0 4 681 3 680
QUC10457.1 0.0 4 681 3 680
QCT37201.1 0.0 4 681 3 680
VEJ57903.1 0.0 4 681 3 680

PDB Hits      download full data without filtering help

Created with Snap3468102136170204239273307341375409443478512546580614648175697VKX_A175697X87_A175697VKW_A175697VKZ_A175695GSL_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
7VKX_A 9.39e-37 17 569 5 557
ChainA, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VKX_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VKY_A Chain A, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VKY_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL0_A Chain A, Beta-galactosidase [Ignavibacterium album JCM 16511],7VL0_B Chain B, Beta-galactosidase [Ignavibacterium album JCM 16511],7VL1_A Chain A, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL1_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL2_A Chain A, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL2_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL3_A Chain A, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL3_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL4_A Chain A, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL4_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL5_A Chain A, Beta-galactosidase [Ignavibacterium album JCM 16511],7VL5_B Chain B, Beta-galactosidase [Ignavibacterium album JCM 16511],7VL6_A Chain A, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL6_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL7_A Chain A, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VL7_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511]
7X87_A 1.01e-36 17 569 10 562
ChainA, Beta-galactosidase [Ignavibacterium album],7X87_B Chain B, Beta-galactosidase [Ignavibacterium album]
7VKW_A 1.01e-36 17 569 10 562
ChainA, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VKW_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511]
7VKZ_A 1.35e-36 17 569 10 562
ChainA, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511],7VKZ_B Chain B, beta-1,2-glucosyltransferase [Ignavibacterium album JCM 16511]
5GSL_A 2.30e-34 17 569 13 555
Glycosidehydrolase A [Pyrococcus horikoshii OT3],5GSL_B Glycoside hydrolase A [Pyrococcus horikoshii OT3]

Swiss-Prot Hits      download full data without filtering help

Created with Snap346810213617020423927330734137540944347851254658061464817569sp|O58247|GLMA_PYRHO17569sp|Q76HN4|GLMA_THEKO17183sp|Q8IW92|GLBL2_HUMAN13187sp|Q8NCI6|GLBL3_HUMAN17183sp|Q3UPY5|GLBL2_MOUSE
Hit ID E-Value Query Start Query End Hit Start Hit End Description
O58247 1.26e-33 17 569 13 555
Exo-beta-D-glucosaminidase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=glmA PE=1 SV=1
Q76HN4 6.06e-27 17 569 11 551
Exo-beta-D-glucosaminidase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=glmA PE=1 SV=1
Q8IW92 2.70e-24 17 183 54 201
Beta-galactosidase-1-like protein 2 OS=Homo sapiens OX=9606 GN=GLB1L2 PE=1 SV=1
Q8NCI6 3.80e-24 13 187 76 231
Beta-galactosidase-1-like protein 3 OS=Homo sapiens OX=9606 GN=GLB1L3 PE=2 SV=3
Q3UPY5 2.49e-22 17 183 54 201
Beta-galactosidase-1-like protein 2 OS=Mus musculus OX=10090 GN=Glb1l2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000054 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000303_00323.