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CAZyme Information: MGYG000000127_00166

You are here: Home > Sequence: MGYG000000127_00166

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Catenibacillus sp902363555
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Catenibacillus; Catenibacillus sp902363555
CAZyme ID MGYG000000127_00166
CAZy Family GH39
CAZyme Description HTH-type transcriptional activator RhaR
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
833 MGYG000000127_1|CGC4 96708.89 6.1923
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000127 6637359 Isolate Canada North America
Gene Location Start: 193228;  End: 195729  Strand: -

Full Sequence      Download help

MLEERHEIVK  FSPNIPIKIF  MHKIGFVSRH  WHQSIELLMI  LDGNVNIRIN  EQSYDLSCED60
IILINSNDIH  ELRSEGAVMI  ALQIDLARFD  NLGDDLENMV  FQCNSAARPD  DPSFNSLRYA120
IATMIRENAH  NARGTEYKNY  AISYYLISEL  IAHFQSTDKT  DAQNQKKYMA  RLTRMVSYIQ180
ENYAENFTLS  DLAAAENLSV  PYLSNFFDKY  MGVKFSQYYT  SVKLDHAVFD  LQNTDASIEE240
IAVRNGFTES  HAFVRAFKKK  YGMLPSAWRR  EKKNDNGSTA  LAPNLNYLKI  EPSNYLHLLT300
KYISSNSGFF  TTPATEYIDK  CSVEAIDVRN  PVQTLKHTFK  TFTTVGRAKE  LLNRDIQKML360
ADQQKTIGFT  YIKFHGILSD  DMMVVSRTAD  QKLHFHYTLV  DMALDFLMSI  KLKPMIQFSF420
MPRELASDRR  KQIFFSAVNT  SPPKSLDEWG  MLIEDFTKHL  LERYGEDEVT  SWLFTVWNEP480
VTPVTMFGFD  NVSDFYHLYK  RTFDSVKQVH  SGLCFGTPSL  LYLENLGNDQ  WIRDFIAWTR540
KNQCFPEFIN  LHYYSDILPN  SQHYAGAAPT  STFPRRTDDF  SLWIGSIRKI  LSECSADHLP600
FYLTEWNFTL  SHRNLINDTC  FKSCYIMKNL  LKNYDRLDSF  GYWSLTDLLE  ENALPDTLFH660
GGLGMYTMNG  LRKNVFYAYD  FANMLGDGLL  ANGDGYFVTR  KKDSYQIITY  NYVHYGDLFA720
AGELYDITET  HRYSAFDMSR  KLQPEITLTG  LPAGTYEIRE  YFVNRDYGSA  YDIWVKMGGV780
PLDPHDTDLL  RGLCVPGYHK  ELRLVEKEQM  TYAPVLEPLE  IRFTEIRYKG  REY833

Enzyme Prediction      help

No EC number prediction in MGYG000000127_00166.

CAZyme Signature Domains help

Created with Snap4183124166208249291333374416458499541583624666708749791333778GH39
Family Start End Evalue family coverage
GH39 333 778 2e-105 0.9791183294663574

CDD Domains      download full data without filtering help

Created with Snap4183124166208249291333374416458499541583624666708749791346778Glyco_hydro_39351778XynB171274AraC186269HTH_ARAC192270HTH_18
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01229 Glyco_hydro_39 1.38e-63 346 778 25 438
Glycosyl hydrolases family 39.
COG3664 XynB 2.54e-37 351 778 1 375
Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207 AraC 4.52e-26 171 274 21 124
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342 HTH_ARAC 8.57e-22 186 269 1 84
helix_turn_helix, arabinose operon control protein.
pfam12833 HTH_18 1.18e-18 192 270 1 80
Helix-turn-helix domain.

CAZyme Hits      help

Created with Snap41831241662082492913333744164584995415836246667087497912826AIQ51292.1|GH392827QMV44012.1|GH392826CQR54373.1|GH392826AIQ16615.1|GH397826QKJ20792.1|GH39
Hit ID E-Value Query Start Query End Hit Start Hit End
AIQ51292.1 1.72e-260 2 826 1 832
QMV44012.1 4.05e-228 2 827 21 850
CQR54373.1 1.39e-225 2 826 1 825
AIQ16615.1 4.41e-221 2 826 1 825
QKJ20792.1 2.55e-201 7 826 6 825

PDB Hits      download full data without filtering help

Created with Snap41831241662082492913333744164584995415836246667087497913308262BS9_A3308261W91_A3308262BFG_A3467786YYH_A3467781PX8_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
2BS9_A 1.44e-65 330 826 9 480
Nativecrystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_B Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_C Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_D Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_E Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_F Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_G Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_H Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
1W91_A 1.98e-65 330 826 9 480
crystalstructure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_B crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_C crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_D crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_E crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_F crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_G crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_H crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct]
2BFG_A 9.98e-65 330 826 9 480
crystalstructure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_B crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_C crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_D crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_E crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_F crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_G crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_H crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus]
6YYH_A 1.81e-53 346 778 48 453
Crystalstructure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYH_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYI_A Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12],6YYI_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12]
1PX8_A 2.02e-50 346 778 25 430
Crystalstructure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1PX8_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_A Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_C Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_D Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum]

Swiss-Prot Hits      download full data without filtering help

Created with Snap4183124166208249291333374416458499541583624666708749791330778sp|Q9ZFM2|XYNB_GEOSE348685sp|P23552|XYNB_CALSA346778sp|O30360|XYNB_THESW346778sp|P36906|XYNB_THESA40776sp|Q6GKK1|Y107_STAAR
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9ZFM2 1.47e-63 330 778 9 433
Beta-xylosidase OS=Geobacillus stearothermophilus OX=1422 GN=xynB PE=1 SV=1
P23552 2.04e-51 348 685 33 356
Beta-xylosidase OS=Caldicellulosiruptor saccharolyticus OX=44001 GN=xynB PE=3 SV=1
O30360 4.35e-50 346 778 25 430
Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) OX=1094508 GN=xynB PE=3 SV=1
P36906 5.25e-49 346 778 25 430
Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynB PE=1 SV=1
Q6GKK1 3.20e-23 40 776 28 689
Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000048 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000127_00166.