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CAZyme Information: MGYG000002276_00492

You are here: Home > Sequence: MGYG000002276_00492

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species OF09-33XD sp003481995
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; OF09-33XD; OF09-33XD sp003481995
CAZyme ID MGYG000002276_00492
CAZy Family GH39
CAZyme Description HTH-type transcriptional activator RhaS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
684 MGYG000002276_3|CGC1 80432.98 6.248
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002276 4093426 Isolate China Asia
Gene Location Start: 8051;  End: 10105  Strand: +

Full Sequence      Download help

MQTYIYDLIH  TLLFHFIKNS  EPLEYTSAER  LTKILQYIQQ  NAAKELTVES  VAAEFFLSPS60
YFSKLFKKEM  NISLLQYLTK  IRLLNAAELL  EKTEKSVADI  CFESGFMSIK  QFQTSFKKQF120
RMPPTTYRSM  QKHTVGEKRI  LTDEGCEDGK  EKIHERLLQH  GRWMVVSKAE  VKRLIVPEHR180
VSVAVKTTPL  RHNWKKILNV  GNAYDVLNVS  IQRSISMVQR  EIGFEYLHFH  GLFDDTMRVY240
YEKNDGTPVF  NFHYIDQIID  FMLSAGLKPY  LELSWMPRKL  ASEKNEKSLN  GVCHSKPKDI300
KIWCNLVQAF  LVHLIGTYTM  EQVRTWMFQV  WDAAFFPPWW  KNSQEEFFEF  YRETFRVIKK360
VIPEAVIGSP  SINPYGFTYT  DWFPNYIKYC  QDKDCLPNFI  SLAVYPHDTY  DLSEEGTLEE420
AVYDIYLPVS  QGEDYIRREL  VNMKKIIKGL  HAGRLPAYVT  QWNMNNAPAF  MSRDTLFGAA480
FLVKNLCENY  DQVESMAYWF  FSDEVEEYNL  ADEPFHGGMG  LIANNGLKKA  AYQAMRLLAK540
LDDELLEKGD  YYFITKGDRR  ISILLYSYIH  YRENCSEEEF  RNSEDRYACF  ENVEKEVSVE600
LTDIPAGRYK  ITEYRLSREV  GSSYDIWKQM  GSPERITDED  LTYINEKALP  QKEVSYLNIS660
ERYSITRTLH  MHEVCLFQLQ  QQSQ684

Enzyme Prediction      help

No EC number prediction in MGYG000002276_00492.

CAZyme Signature Domains help

Created with Snap3468102136171205239273307342376410444478513547581615649187636GH39
Family Start End Evalue family coverage
GH39 187 636 3e-106 0.9930394431554525

CDD Domains      download full data without filtering help

Created with Snap3468102136171205239273307342376410444478513547581615649180679Glyco_hydro_39206664XynB21133AraC45128HTH_ARAC51128HTH_18
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01229 Glyco_hydro_39 1.92e-63 180 679 4 487
Glycosyl hydrolases family 39.
COG3664 XynB 1.75e-40 206 664 1 408
Beta-xylosidase [Carbohydrate transport and metabolism].
COG2207 AraC 9.25e-27 21 133 12 124
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342 HTH_ARAC 4.70e-26 45 128 1 84
helix_turn_helix, arabinose operon control protein.
pfam12833 HTH_18 4.34e-21 51 128 1 79
Helix-turn-helix domain.

CAZyme Hits      help

Created with Snap34681021361712052392733073423764104444785135475816156491679AYA77562.1|GH397680QJA07548.1|GH398679AIQ21948.1|GH391676AFH60783.1|GH3929678AIK38121.1|GH39
Hit ID E-Value Query Start Query End Hit Start Hit End
AYA77562.1 1.47e-133 1 679 141 828
QJA07548.1 1.05e-132 7 680 146 828
AIQ21948.1 1.02e-128 8 679 144 841
AFH60783.1 9.76e-128 1 676 141 829
AIK38121.1 1.27e-127 29 678 170 831

PDB Hits      download full data without filtering help

Created with Snap34681021361712052392733073423764104444785135475816156491916812BFG_A1916812BS9_A1916811W91_A1946791PX8_A1936796YYH_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
2BFG_A 2.39e-58 191 681 15 482
crystalstructure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_B crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_C crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_D crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_E crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_F crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_G crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_H crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus]
2BS9_A 1.21e-57 191 681 15 482
Nativecrystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_B Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_C Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_D Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_E Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_F Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_G Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_H Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
1W91_A 1.68e-57 191 681 15 482
crystalstructure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_B crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_C crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_D crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_E crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_F crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_G crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_H crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct]
1PX8_A 7.96e-57 194 679 18 479
Crystalstructure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1PX8_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_A Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_C Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_D Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum]
6YYH_A 1.01e-51 193 679 40 502
Crystalstructure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYH_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYI_A Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12],6YYI_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12]

Swiss-Prot Hits      download full data without filtering help

Created with Snap3468102136171205239273307342376410444478513547581615649191633sp|Q9ZFM2|XYNB_GEOSE194679sp|P36906|XYNB_THESA194679sp|O30360|XYNB_THESW194547sp|P23552|XYNB_CALSA30128sp|Q05587|POCR_SALTY
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q9ZFM2 2.48e-56 191 633 15 435
Beta-xylosidase OS=Geobacillus stearothermophilus OX=1422 GN=xynB PE=1 SV=1
P36906 1.59e-55 194 679 18 479
Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynB PE=1 SV=1
O30360 1.11e-54 194 679 18 479
Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) OX=1094508 GN=xynB PE=3 SV=1
P23552 2.86e-52 194 547 24 362
Beta-xylosidase OS=Caldicellulosiruptor saccharolyticus OX=44001 GN=xynB PE=3 SV=1
Q05587 2.31e-10 30 128 193 291
Regulatory protein PocR OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=pocR PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000051 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002276_00492.