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CAZyme Information: MGYG000003205_00074

You are here: Home > Sequence: MGYG000003205_00074

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species CAG-312 sp900760055
Lineage Bacteria; Verrucomicrobiota; Verrucomicrobiae; Opitutales; CAG-312; CAG-312; CAG-312 sp900760055
CAZyme ID MGYG000003205_00074
CAZy Family GH39
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
646 MGYG000003205_2|CGC1 72878.92 8.8436
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003205 2897966 MAG United States North America
Gene Location Start: 46021;  End: 47961  Strand: +

Full Sequence      Download help

MKIFKRLIVF  VSVFSFLAIA  LICAENGISE  TPQNPYGICA  HIAKNEYPVY  RKAIDTMEAV60
GIGTFRSGAN  WINAEKTKGK  FDFSRWESLI  SYAEKKGIEP  LVIFPSNTPS  FAKPFPKHID120
ELAEVCKRFA  GHFKDKMKYF  EVVNEPNLKI  FWDGEDPDAR  AYANLLKRVS  TAIKEGNPRA180
KVLYSGVAGT  PVEFIEESFK  AGAGEYFDIM  NFHPYSWYDI  PEKTLLANIE  KVKGLMHKYG240
IEDKPVWITE  FGYTSAQAHP  SIPKYVAKSL  KILGVDKAKG  KIAYIHDERF  AYFGNLFNGS300
AEWLFPQAKN  FHRINFDEIK  NLSPSDCPVL  YILPNEIFPK  KYRSDLLEYV  KKGGTLVTVG360
GIPFYYDTEG  LENGKAKRKV  AGRSPLKAFR  MGVKTFKDYG  FVEPNLVKMR  IHPGRRVAKT420
ESAEGFSDIK  CEGYFPPYFI  STENTTPDDE  VIPIVYGVFG  DKKLPLGAIY  KLGGEFKGNI480
IAFYGILGES  ASEQMQAKML  PRQFILARSR  GIERVFKYCL  ISDAFDYTRE  SHFGIVGKNL540
EPKPSYYAYK  TLAETLENSL  PEYRSCGNIN  IAEWVREKDG  VPVAAIWSNY  YKQPVNIKFE600
GKIISAKNYI  GEKVGIAAEG  QTLSLDADMG  VLYLEGVKNV  EICKSE646

Enzyme Prediction      help

No EC number prediction in MGYG000003205_00074.

CAZyme Signature Domains help

Created with Snap32649612916119322625829032335538741945248451654958161374258GH39
Family Start End Evalue family coverage
GH39 74 258 4e-28 0.505800464037123

CDD Domains      download full data without filtering help

Created with Snap326496129161193226258290323355387419452484516549581613116273Glyco_hydro_39114255agarase_cat144255Glyco_hydro_cc71160Glyco_1071146XynA
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01229 Glyco_hydro_39 3.30e-07 116 273 121 295
Glycosyl hydrolases family 39.
cd21510 agarase_cat 1.02e-04 114 255 71 234
alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.
pfam11790 Glyco_hydro_cc 1.95e-04 144 255 71 173
Glycosyl hydrolase catalytic core. This family is probably a glycosyl hydrolase, and is conserved in fungi and some Proteobacteria. The pombe member is annotated as being from IPR013781.
smart00633 Glyco_10 0.002 71 160 3 96
Glycosyl hydrolase family 10.
COG3693 XynA 0.002 71 146 69 151
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].

CAZyme Hits      help

Created with Snap32649612916119322625829032335538741945248451654958161334640AVM44885.1|GH3927638QDU57372.1|GH3934618AVM44901.1|GH3924588AHF90941.1|GH3934255ACZ43011.1|CBM9|GH39
Hit ID E-Value Query Start Query End Hit Start Hit End
AVM44885.1 2.46e-102 34 640 27 614
QDU57372.1 1.54e-68 27 638 21 626
AVM44901.1 1.29e-43 34 618 25 608
AHF90941.1 3.01e-30 24 588 212 803
ACZ43011.1 3.94e-27 34 255 302 530

PDB Hits      download full data without filtering help

Created with Snap3264961291611932262582903233553874194524845165495816131162511PX8_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
1PX8_A 5.12e-06 116 251 124 278
Crystalstructure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1PX8_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_A Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_C Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_D Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.018126 0.249359 0.731936 0.000207 0.000164 0.000197

TMHMM  Annotations      download full data without filtering help

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