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CAZyme Information: MGYG000004414_00371

You are here: Home > Sequence: MGYG000004414_00371

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Agathobacter sp900549895
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter; Agathobacter sp900549895
CAZyme ID MGYG000004414_00371
CAZy Family GH42
CAZyme Description Beta-galactosidase bgaB
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
667 MGYG000004414_5|CGC1 76285.67 5.2759
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004414 2422277 MAG Israel Asia
Gene Location Start: 22417;  End: 24420  Strand: +

Full Sequence      Download help

MKTDHLLFGA  AYYSEYLPYD  RVEKDMEMMA  KAGMNTIRIA  ESTWSTIEPR  DGVFDFTHLD60
KMLDAAAKHG  ISVIVGTPTY  AIPTWLAKKY  PDILALTNNG  QNIYGARQNM  DITHAGYRFH120
CERVIRAIME  HIKDVPYIIG  FQLDNETKSY  GTAGPRAQAM  FVDYLKKKYP  DINEFNHEFG180
FDYWSNRINA  WEDFPDVRGT  INQSFAAEYA  KFQRLLVTDF  LKWQASIVSE  YKRDDQFITQ240
NFDYEWTDHS  IGYQPEVNQY  EAADATTVAG  CDIYHPSQSL  LTGEEITFCG  NISRSLKKDN300
YLILETQAQG  NIAWLPYPGQ  LRLQAYSHIA  NGANSIMYWH  WHSIHNACES  YWKGVLSHDF360
SENATYREAC  TIGADWKRIG  SHIQNLKKNN  RVAILLDNNS  LTGLRLFPIG  KLGEHSYNAV420
ARWIGDTLYR  MNIEYDMISS  AERDFASYDC  VIAPALYSAS  EELLHVLNNY  VKDGGHLITT480
FRSAFSDEQI  KIYSDTQPHI  LHECLGIHYD  QYTYPEENAK  VTLTDGTTSA  CKYWMDMVVC540
DTASPLFFYN  HPAWNTYAAA  TVNQYGKGCA  LYLATMFEQT  SLEKVLRDYF  ESSCPEILAH600
SDCHFPVIIK  EGTNDFGKRI  RFYFNYSGEK  QHAVCKDFSG  TELLSGEPVA  EGDEIVLDSW660
GFKVIEG667

Enzyme Prediction      help

No EC number prediction in MGYG000004414_00371.

CAZyme Signature Domains help

Created with Snap336610013316620023326630033336640043346650053356660063312377GH42
Family Start End Evalue family coverage
GH42 12 377 4.9e-114 0.9919137466307277

CDD Domains      download full data without filtering help

Created with Snap336610013316620023326630033336640043346650053356660063312379Glyco_hydro_425650GanA390589Glyco_hydro_42M392498A4_beta-galactosidase_middle_domain4473Glyco_10
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam02449 Glyco_hydro_42 2.27e-79 12 379 2 376
Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
COG1874 GanA 8.01e-61 5 650 15 657
Beta-galactosidase GanA [Carbohydrate transport and metabolism].
pfam08532 Glyco_hydro_42M 2.38e-27 390 589 1 200
Beta-galactosidase trimerisation domain. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation.
cd03143 A4_beta-galactosidase_middle_domain 1.14e-17 392 498 1 104
A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
smart00633 Glyco_10 0.003 44 73 3 32
Glycosyl hydrolase family 10.

CAZyme Hits      help

Created with Snap33661001331662002332663003333664004334665005335666006331666AEN97308.1|GH421666VCV21307.1|GH421666CBL10553.1|GH421666CBL13079.1|GH421665ACR75077.1|GH42
Hit ID E-Value Query Start Query End Hit Start Hit End
AEN97308.1 0.0 1 666 1 665
VCV21307.1 0.0 1 666 1 687
CBL10553.1 0.0 1 666 1 687
CBL13079.1 0.0 1 666 1 687
ACR75077.1 8.91e-282 1 665 1 659

PDB Hits      download full data without filtering help

Created with Snap336610013316620023326630033336640043346650053356660063336675XB7_A26663TTS_A85994UOQ_A85994UNI_A96676LVW_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5XB7_A 2.62e-214 3 667 6 695
GH42alpha-L-arabinopyranosidase from Bifidobacterium animalis subsp. lactis Bl-04 [Bifidobacterium animalis subsp. lactis],5XB7_B GH42 alpha-L-arabinopyranosidase from Bifidobacterium animalis subsp. lactis Bl-04 [Bifidobacterium animalis subsp. lactis],5XB7_C GH42 alpha-L-arabinopyranosidase from Bifidobacterium animalis subsp. lactis Bl-04 [Bifidobacterium animalis subsp. lactis],5XB7_D GH42 alpha-L-arabinopyranosidase from Bifidobacterium animalis subsp. lactis Bl-04 [Bifidobacterium animalis subsp. lactis],5XB7_E GH42 alpha-L-arabinopyranosidase from Bifidobacterium animalis subsp. lactis Bl-04 [Bifidobacterium animalis subsp. lactis],5XB7_F GH42 alpha-L-arabinopyranosidase from Bifidobacterium animalis subsp. lactis Bl-04 [Bifidobacterium animalis subsp. lactis]
3TTS_A 1.11e-56 2 666 5 673
ChainA, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTS_B Chain B, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTS_C Chain C, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTS_D Chain D, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTS_E Chain E, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTS_F Chain F, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTY_A Chain A, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTY_B Chain B, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTY_C Chain C, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTY_D Chain D, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTY_E Chain E, Beta-galactosidase [Niallia circulans subsp. alkalophilus],3TTY_F Chain F, Beta-galactosidase [Niallia circulans subsp. alkalophilus]
4UOQ_A 6.27e-49 8 599 25 622
Nucleophilemutant (E324A) of beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 [Bifidobacterium animalis subsp. lactis Bl-04],4UOQ_B Nucleophile mutant (E324A) of beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 [Bifidobacterium animalis subsp. lactis Bl-04],4UOQ_C Nucleophile mutant (E324A) of beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 [Bifidobacterium animalis subsp. lactis Bl-04],4UOZ_A beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 nucleophile mutant E324A in complex with galactose [Bifidobacterium animalis subsp. lactis Bl-04],4UOZ_B beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 nucleophile mutant E324A in complex with galactose [Bifidobacterium animalis subsp. lactis Bl-04],4UOZ_C beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 nucleophile mutant E324A in complex with galactose [Bifidobacterium animalis subsp. lactis Bl-04]
4UNI_A 8.54e-49 8 599 25 622
beta-(1,6)-galactosidasefrom Bifidobacterium animalis subsp. lactis Bl-04 in complex with galactose [Bifidobacterium animalis subsp. lactis Bl-04],4UNI_B beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 in complex with galactose [Bifidobacterium animalis subsp. lactis Bl-04],4UNI_C beta-(1,6)-galactosidase from Bifidobacterium animalis subsp. lactis Bl-04 in complex with galactose [Bifidobacterium animalis subsp. lactis Bl-04]
6LVW_A 1.23e-48 9 667 4 689
PolyextremophilicBeta-galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundi [Halorubrum lacusprofundi ATCC 49239]

Swiss-Prot Hits      download full data without filtering help

Created with Snap33661001331662002332663003333664004334665005335666006339666sp|D9SM34|BGAL_CLOC76590sp|P19668|BGAL_GEOKU6590sp|C9S0R2|BGAL_GEOSY2647sp|Q5FJ41|BGAL1_LACAC2647sp|C6H178|BGAL2_LACAI
Hit ID E-Value Query Start Query End Hit Start Hit End Description
D9SM34 2.90e-68 9 666 4 656
Beta-galactosidase BgaA OS=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) OX=573061 GN=bgaA PE=1 SV=1
P19668 1.86e-66 6 590 7 591
Beta-galactosidase bgaB OS=Geobacillus kaustophilus OX=1462 GN=bgaB PE=1 SV=1
C9S0R2 3.47e-65 6 590 7 591
Beta-galactosidase BgaB OS=Geobacillus sp. (strain Y412MC61) OX=544556 GN=bgaB PE=3 SV=1
Q5FJ41 2.62e-60 2 647 3 651
Beta-galactosidase LacZ OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) OX=272621 GN=lacZ PE=1 SV=1
C6H178 3.24e-58 2 647 3 651
Beta-galactosidase LacA OS=Lactobacillus acidophilus OX=1579 GN=lacA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000061 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004414_00371.