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CAZyme Information: MGYG000001261_00251

You are here: Home > Sequence: MGYG000001261_00251

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Caulobacter sp903900155
Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter; Caulobacter sp903900155
CAZyme ID MGYG000001261_00251
CAZy Family GH55
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1003 107303.18 6.7946
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001261 5012197 MAG Italy Europe
Gene Location Start: 10594;  End: 13605  Strand: -

Full Sequence      Download help

MRALVLSLLL  AASSPVLAAA  AAPSSAWPVA  PDDPRAVTVK  AVGDGKTDDT  DAIQKAIDAG60
RDSTGHGLVF  LPSGRYRLSR  TILIPPGIRV  FGVGKTRPVL  VLGPDTPGFQ  DGVGTMVVFT120
GGDQYQVGDI  PVPVPTVRPA  TAKVRDANSG  AFYSSMANID  IEIGEGNPAA  AGVRFRMAQH180
AFLKHMNFRL  GSGFAGVYQA  GNIMEDVHFQ  GGRYGIVTEK  TSPAWQFTLV  DSTFDGQRDA240
AIREHEVDLT  LVNVAIRNTP  VGIEIDKGYS  DSLWGKNVRF  ENVSKAGVVI  SAEDNVFTQV300
GFDNAVASNT  PVFARFRDSG  KTVEGKGKAY  RVGSFTYGLT  LPAMGQMGEY  KTLSDITPLK360
ALPAATAPAL  RSLPPMAEWT  NVKTLGVKGD  SSTDDTAALQ  KAIDSHKVLY  LPIGFYRVSD420
TLKLKPDTVL  IGLHPALTQL  VIPDGNPGHV  GVGPVRPILE  TPRGGDNIVA  GIGLFTGRIN480
PRASALLWRS  GEKSLVTDVK  IMGGGGTPTA  DGKPLGAAQA  RSGDPVADGR  WDAQYPSIWV540
TDGGGGAFAN  VWSPNTFASA  GFYISDTKTP  GHIYEVSVEH  HVRNEFVLDN  VENWEFLAPQ600
TEQEVGDGPD  AVSLEVRNSR  NILFANYHGY  RVTRSYHPAE  AAVKLFNSTD  IRFRNVHINA660
ESGIALCDKV  GCGTYLRASK  YPFENAIQDK  TSKLEVRERE  FAVLDVKGDQ  PAPAPADPRV720
KKLETGFWSI  SGATTGADGA  LYFVEKRFQR  IYRWTAAKGL  EIVRDASLDP  TNLAMDASGK780
LLVVSSLGPQ  GAVYSIDPGG  PHDAMTMIAP  TAVTSRGKGK  TLLPVNWWNN  GEFRDQYDPA840
KGEFTTLAQM  FARDVGMPKA  QEYVSPDGSV  SLPAFRVWQQ  GPPDHVGWRW  SDSLQANGLI900
GGAVGERLFF  TNGSENKTYS  GQVGPGGTLT  DLKIFANRGG  ESVAVDGQGR  VFVANGQIFQ960
YAPDGSLTGR  IDVPERPLQL  IFGGEGGKTL  FVLTHHSLYA  VTP1003

Enzyme Prediction      help

No EC number prediction in MGYG000001261_00251.

CAZyme Signature Domains help

Created with Snap50100150200250300351401451501551601651702752802852902952148604GH55
Family Start End Evalue family coverage
GH55 148 604 3.9e-98 0.6418918918918919

CDD Domains      download full data without filtering help

Created with Snap5010015020025030035140145150155160165170275280285290295241264Pectate_lyase_3736996SGL379520Pectate_lyase_3736997YvrE4076Pgu1
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam12708 Pectate_lyase_3 2.38e-23 41 264 9 213
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
pfam08450 SGL 1.52e-12 736 996 9 246
SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.
pfam12708 Pectate_lyase_3 1.08e-11 379 520 1 126
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
COG3386 YvrE 4.51e-08 736 997 34 277
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism].
COG5434 Pgu1 0.001 40 76 89 124
Polygalacturonase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Created with Snap5010015020025030035140145150155160165170275280285290295211003ADG10334.1|GH5511003AVQ02066.1|GH5511001AZS22151.1|GH55211003AHE56388.1|GH55211003AUW59624.1|GH55
Hit ID E-Value Query Start Query End Hit Start Hit End
ADG10334.1 0.0 1 1003 1 1001
AVQ02066.1 0.0 1 1003 1 1001
AZS22151.1 0.0 1 1001 1 1002
AHE56388.1 0.0 21 1003 29 1014
AUW59624.1 0.0 21 1003 24 1009

PDB Hits      download full data without filtering help

Created with Snap50100150200250300351401451501551601651702752802852902952416515M5Z_A3814323GQ7_A3814323SUC_A3814326QZ9_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5M5Z_A 2.52e-17 41 651 36 678
ChainA, Beta-1,3-glucanase [Thermochaetoides thermophila],5M60_A Chain A, Beta-1,3-glucanase [Thermochaetoides thermophila]
3GQ7_A 4.46e-06 381 432 24 75
ChainA, Preneck appendage protein [Salasvirus phi29],3GQ8_A Chain A, Preneck appendage protein [Salasvirus phi29],3GQ9_A Chain A, Preneck appendage protein [Salasvirus phi29],3GQA_A Chain A, Preneck appendage protein [Salasvirus phi29]
3SUC_A 4.93e-06 381 432 24 75
ChainA, Preneck appendage protein [Bacillus phage phi29]
6QZ9_A 5.10e-06 381 432 106 157
ChainA, Pre-neck appendage protein [Salasvirus phi29],6QZ9_B Chain B, Pre-neck appendage protein [Salasvirus phi29],6QZ9_C Chain C, Pre-neck appendage protein [Salasvirus phi29],6QZ9_D Chain D, Pre-neck appendage protein [Salasvirus phi29],6QZ9_E Chain E, Pre-neck appendage protein [Salasvirus phi29],6QZ9_F Chain F, Pre-neck appendage protein [Salasvirus phi29],6QZ9_G Chain G, Pre-neck appendage protein [Salasvirus phi29],6QZ9_H Chain H, Pre-neck appendage protein [Salasvirus phi29],6QZ9_I Chain I, Pre-neck appendage protein [Salasvirus phi29],6QZ9_J Chain J, Pre-neck appendage protein [Salasvirus phi29],6QZ9_K Chain K, Pre-neck appendage protein [Salasvirus phi29],6QZ9_L Chain L, Pre-neck appendage protein [Salasvirus phi29],6QZ9_M Chain M, Pre-neck appendage protein [Salasvirus phi29],6QZ9_N Chain N, Pre-neck appendage protein [Salasvirus phi29],6QZ9_O Chain O, Pre-neck appendage protein [Salasvirus phi29],6QZ9_P Chain P, Pre-neck appendage protein [Salasvirus phi29],6QZ9_Q Chain Q, Pre-neck appendage protein [Salasvirus phi29],6QZ9_R Chain R, Pre-neck appendage protein [Salasvirus phi29],6QZ9_S Chain S, Pre-neck appendage protein [Salasvirus phi29],6QZ9_T Chain T, Pre-neck appendage protein [Salasvirus phi29],6QZ9_U Chain U, Pre-neck appendage protein [Salasvirus phi29],6QZ9_V Chain V, Pre-neck appendage protein [Salasvirus phi29],6QZ9_W Chain W, Pre-neck appendage protein [Salasvirus phi29],6QZ9_X Chain X, Pre-neck appendage protein [Salasvirus phi29],6QZ9_Y Chain Y, Pre-neck appendage protein [Salasvirus phi29],6QZ9_Z Chain Z, Pre-neck appendage protein [Salasvirus phi29],6QZ9_a Chain a, Pre-neck appendage protein [Salasvirus phi29],6QZ9_b Chain b, Pre-neck appendage protein [Salasvirus phi29],6QZ9_c Chain c, Pre-neck appendage protein [Salasvirus phi29],6QZ9_d Chain d, Pre-neck appendage protein [Salasvirus phi29],6QZ9_e Chain e, Pre-neck appendage protein [Salasvirus phi29],6QZ9_f Chain f, Pre-neck appendage protein [Salasvirus phi29],6QZ9_g Chain g, Pre-neck appendage protein [Salasvirus phi29],6QZ9_h Chain h, Pre-neck appendage protein [Salasvirus phi29],6QZ9_i Chain i, Pre-neck appendage protein [Salasvirus phi29],6QZ9_j Chain j, Pre-neck appendage protein [Salasvirus phi29],6QZF_A Chain A, Pre-neck appendage protein [Salasvirus phi29],6QZF_B Chain B, Pre-neck appendage protein [Salasvirus phi29],6QZF_C Chain C, Pre-neck appendage protein [Salasvirus phi29],6QZF_D Chain D, Pre-neck appendage protein [Salasvirus phi29],6QZF_E Chain E, Pre-neck appendage protein [Salasvirus phi29],6QZF_F Chain F, Pre-neck appendage protein [Salasvirus phi29],6QZF_G Chain G, Pre-neck appendage protein [Salasvirus phi29],6QZF_H Chain H, Pre-neck appendage protein [Salasvirus phi29],6QZF_I Chain I, Pre-neck appendage protein [Salasvirus phi29],6QZF_J Chain J, Pre-neck appendage protein [Salasvirus phi29],6QZF_K Chain K, Pre-neck appendage protein [Salasvirus phi29],6QZF_L Chain L, Pre-neck appendage protein [Salasvirus phi29],6QZF_M Chain M, Pre-neck appendage protein [Salasvirus phi29],6QZF_N Chain N, Pre-neck appendage protein [Salasvirus phi29],6QZF_O Chain O, Pre-neck appendage protein [Salasvirus phi29],6QZF_P Chain P, Pre-neck appendage protein [Salasvirus phi29],6QZF_Q Chain Q, Pre-neck appendage protein [Salasvirus phi29],6QZF_R Chain R, Pre-neck appendage protein [Salasvirus phi29],6QZF_S Chain S, Pre-neck appendage protein [Salasvirus phi29],6QZF_T Chain T, Pre-neck appendage protein [Salasvirus phi29],6QZF_U Chain U, Pre-neck appendage protein [Salasvirus phi29],6QZF_V Chain V, Pre-neck appendage protein [Salasvirus phi29],6QZF_W Chain W, Pre-neck appendage protein [Salasvirus phi29],6QZF_X Chain X, Pre-neck appendage protein [Salasvirus phi29],6QZF_Y Chain Y, Pre-neck appendage protein [Salasvirus phi29],6QZF_Z Chain Z, Pre-neck appendage protein [Salasvirus phi29],6QZF_a Chain a, Pre-neck appendage protein [Salasvirus phi29],6QZF_b Chain b, Pre-neck appendage protein [Salasvirus phi29],6QZF_c Chain c, Pre-neck appendage protein [Salasvirus phi29],6QZF_d Chain d, Pre-neck appendage protein [Salasvirus phi29],6QZF_e Chain e, Pre-neck appendage protein [Salasvirus phi29],6QZF_f Chain f, Pre-neck appendage protein [Salasvirus phi29],6QZF_g Chain g, Pre-neck appendage protein [Salasvirus phi29],6QZF_h Chain h, Pre-neck appendage protein [Salasvirus phi29],6QZF_i Chain i, Pre-neck appendage protein [Salasvirus phi29],6QZF_j Chain j, Pre-neck appendage protein [Salasvirus phi29]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000454 0.998759 0.000185 0.000220 0.000189 0.000175

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001261_00251.