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CAZyme Information: MGYG000002788_00133

You are here: Home > Sequence: MGYG000002788_00133

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UMGS1004 sp900548845
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; Borkfalkiaceae; UMGS1004; UMGS1004 sp900548845
CAZyme ID MGYG000002788_00133
CAZy Family CBM67
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
748 83672.13 5.0056
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002788 1418375 MAG United States North America
Gene Location Start: 13;  End: 2259  Strand: -

Full Sequence      Download help

MQLYDLRVVE  AAGGFCRTGR  PHFSWKLRSD  KKDTKQVSFE  LCVFRGGERV  SSAGGNGECA60
YVLAEGEALL  PRTRYEVRVT  AEDNHGERAE  EALVFETDKL  SEPFAAKMIA  PKQAPAPVYA120
LKAKFTAKKP  VKSARLYATA  LGLYECYFGG  VKAGDSYFAP  FWTSYPHTLE  YQTYDVTSLI180
KEGENDFSML  IGKGWYAGAL  GFMKQRGIYG  DRTAGMAEVR  LLYEDGTEDV  FATDESFTAV240
STYIADSEFY  FGETQDFTQE  EKTSPVEAVS  FPAKVVGQIN  EPVRCTEVLK  PVSAFHTPKG300
EYVLDFGQNF  TGFVSLEVDG  KRGETITLRH  AEVLDKEGNF  YTENLREATS  EDTFILAGGK360
QVLTPHFTFH  GFRYLQIVGK  ELPLEAVTGL  VLHSDMRRTG  TFECSDPRVE  RLWKNIVWGQ420
RSNFVDVPTD  CPQRDERLGW  TGDANVFFRT  AAFNYDVSSF  FDKWLIDLAS  EQRADGSVPH480
VIPDILSNND  GAALWSDCAA  MIPWNEYLVY  GDKAALRAQF  PAMKKWVDFV  YSRCSENGLW540
QTGFQYGDWL  ALDGSNPATR  TGSTDKHLVA  NVFYYVSTGI  VAKAAEVLGE  EALAKQYAAR600
ADAVKVAFQT  EYFTATGRLV  SETQTACVLT  LYFGLVPEGK  RARVIETLRT  NLSEHNNHLV660
TGFAGTPYLL  FALSENGMHD  LAEKLLFHED  FPSWLYAVRM  GATTIWERWD  GILPDGSLHE720
PSMNSFNHYS  YGSVGDWLYR  VVAGIRET748

Enzyme Prediction      help

EC 3.2.1.40

CAZyme Signature Domains help

Created with Snap3774112149187224261299336374411448486523561598635673710296747GH78113260CBM67
Family Start End Evalue family coverage
GH78 296 747 2e-166 0.876984126984127
CBM67 113 260 7.1e-20 0.7784090909090909

CDD Domains      download full data without filtering help

Created with Snap3774112149187224261299336374411448486523561598635673710397742Bac_rhamnosid6H129287Bac_rhamnosid_N296393Bac_rhamnosid
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17389 Bac_rhamnosid6H 1.05e-157 397 742 1 340
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam08531 Bac_rhamnosid_N 7.54e-49 129 287 1 172
Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam05592 Bac_rhamnosid 2.09e-33 296 393 2 102
Bacterial alpha-L-rhamnosidase concanavalin-like domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits      help

Created with Snap37741121491872242612993363744114484865235615986356737101746QLG40468.1|GH781747QRT30265.1|GH7818747QYH55287.1|GH781748VCV22853.1|GH781748CBL11431.1|GH78
Hit ID E-Value Query Start Query End Hit Start Hit End
QLG40468.1 6.75e-245 1 746 1 755
QRT30265.1 2.05e-241 1 747 1 755
QYH55287.1 1.05e-229 18 747 19 760
VCV22853.1 1.63e-227 1 748 1 761
CBL11431.1 1.63e-227 1 748 1 761

PDB Hits      download full data without filtering help

Created with Snap37741121491872242612993363744114484865235615986356737101297453W5M_A277486GSZ_A217466I60_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3W5M_A 1.69e-150 129 745 314 933
CrystalStructure of Streptomyces avermitilis alpha-L-rhamnosidase [Streptomyces avermitilis MA-4680 = NBRC 14893],3W5N_A Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase complexed with L-rhamnose [Streptomyces avermitilis MA-4680 = NBRC 14893]
6GSZ_A 2.46e-146 27 748 55 781
Crystalstructure of native alfa-L-rhamnosidase from Aspergillus terreus [Aspergillus terreus]
6I60_A 3.40e-117 21 746 51 838
Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]

Swiss-Prot Hits      download full data without filtering help

Created with Snap3774112149187224261299336374411448486523561598635673710129745sp|Q82PP4|RHA78_STRAW21746sp|P9WF03|RHA78_ALTSL121745sp|T2KNB2|PLH20_FORAG124735sp|T2KPL4|PLH28_FORAG
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q82PP4 6.75e-150 129 745 314 933
Alpha-L-rhamnosidase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_828 PE=1 SV=1
P9WF03 6.13e-122 21 746 51 818
Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
T2KNB2 1.38e-121 121 745 177 817
Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
T2KPL4 1.82e-72 124 735 190 841
Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000070 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002788_00133.