logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002505_00186

You are here: Home > Sequence: MGYG000002505_00186

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Oxalobacter formigenes_B
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Oxalobacter; Oxalobacter formigenes_B
CAZyme ID MGYG000002505_00186
CAZy Family GT84
CAZyme Description Cyclic beta-(1,2)-glucan synthase NdvB
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2935 MGYG000002505_1|CGC2 332962.88 6.4362
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002505 2465390 Isolate not provided North America
Gene Location Start: 218172;  End: 226979  Strand: -

Full Sequence      Download help

MKTISELFNL  FRQTPFFFQN  GQGSTDNRAF  LLEEEPLRSE  LYSITQMGQY  GRYLARTHVL60
DDKPEKDRLL  ARLSDNETVI  RKVYDILASA  VRTESRITPA  AEWLLDNFYL  IEEQIQIAKN120
HLPERYSTEL  PRLANGPMAG  MPRVYELALE  VVSHGDGHID  ANSLAHFISS  YQEESVLTLG180
ELWAIPIMLR  LALIENLRRV  SARLAVSRAH  HELAEAWVQK  FIDTAENDPG  NLILQVADLA240
RSHPPMVSAF  VAELTRRLQS  QKAILALPLT  WISQRLSETG  MTIEQLVMLE  TQRQAADQVS300
ISNSIGSIRL  LSAMDWHEFV  ESLSVVEQIL  RTDPTAVYPK  MDFTSRDHYR  HEIEEIAKKS360
PLTEAEIAQH  AIDLTKQAFD  DPQAQKRTGH  VGYYLIDRGR  PELEKSVQMK  KTWLEKWMGS420
RICSPVFAYL  GAFSLLTLLL  SGLMIYGAGI  GSVPVWLWSI  TVVCTLLASS  QLALAVVNWF480
SAFPSRSDPL  PKMDFSKGIP  EGHETLVVVP  SMLINEKQVE  GLCDALEVHY  LANRDKRLKF540
CLLTDLTDAH  TETTPEDSVL  LDRLAHLIDE  LNGKHAKDGE  GPFLALCRPR  RWNPGEKKWI600
GYERKRGKLE  ELNRFLRGQD  NNDFTVRIGN  TGHLELTRYV  ITLDSDTHLL  RDSARLFVGA660
MAHPLNAPRY  DTVKDRVVEG  YGILQPRITT  SLPNGNASWY  EKLYGGDAGI  DPYTRTVSDV720
YQDVFGEGSF  IGKGIYDVDA  VYRTLNARLP  ENSVLSHDLL  EGCYARSGLL  SDGQLYEQYP780
SSYLADVKRR  HRWIRGDWQL  LKWLFPFVPD  AREQNRSGKQ  RNPLSLLSRW  KLFDNLRRSL840
FAPAAVFLFF  VSLTVFTPAW  TWLVFLLAIF  FLPPLLVSMT  DLVKKGRDIS  IKQHLSAVSH900
SISRHFLGAL  LSLVLLPHEA  CYSADAILRT  LWRTFFSRRH  LLEWVPSAMT  SQNDGSVTTY960
FRNMWFAPAY  AIALAFGMSA  MRPDLFVFSS  PFIFGWLISP  VIAWKISLPS  ITEITELSDK1020
QKLFLRKLSR  KIWSFFDAYI  GAEDNWLPPD  NIQQMPTFSS  INEKLQIDET  LPKIPEIVIA1080
HRTSPTNIGL  ALLAYLAACD  FGYIPSNQLI  ARLSNTFGSM  GKLERYRGHF  YNWYDTKTLH1140
PLQNPIYISS  VDSGNLAGHL  ITLKSGLAEQ  KNRPALTERL  VDSLRDTFEL  LRDEGIGHYP1200
VQIAELDRKL  ADWENRALTL  KQRHVLLNSL  VESLTRLVSV  TSKDTRTQAG  FWSNALLSQC1260
NQQLDEMASL  MPWVLLPEWR  NGPDPVPRLN  DNMTLQQLAE  LPEHLAAMFD  TPEKKDSGKE1320
AALLNELAAR  VALAGKEARK  RLDAYDELIR  QAEDFSQMDF  TFLYNKSTHL  LSIGYNITDR1380
RIDNSYYDLL  ASEARLTSFV  AIALGQIPQE  NWFALGRMMT  VIGGDPILLS  WSGSMFEYLM1440
PHLVMPSFEN  TLLDQTHKAA  VWRQRDYGKQ  RGVPWGISES  AYYAFDARLN  YQYRAFGVPG1500
LGLKRGLADD  LVIAPYATML  AVMVEPEMSC  ANLMELEEKG  FCGRYGLFEA  IDYTQSRLTR1560
GQNYAIVQSY  MAHHQGMSFL  ALESCLLDQP  MQKRFEADPW  FQATLPLLHE  KIPKTIAYFE1620
RTPNLSKTQM  ASIPAEMPTR  VYTTPDTRIP  EIQLLSNGSY  HVMVTNAGAG  YSRWKDYAVT1680
RWKPDTTRDN  WGTFFYLRDL  EDGHFWSTTY  QPVRQPLGKY  ETVFSEGRAE  YKSAHDGIET1740
QCEVVVSPED  DIELRRHKIV  NRSGKARTVE  LTSYSETVIA  APIADLSHPA  FSKLFVQTEI1800
VPEFHAILST  RRPRFVEEKP  PYAFSMIVVH  DRENPDMSYE  TDRLKFLGRM  NTPNAPLALT1860
GKAPLSGSQG  SVLDPVSAIR  CRFVLQPEET  IVIDYVAGMT  HDREQCLRLM  DKYDDKYLAD1920
RVFEMAWTHS  QAFLHQLNAD  ESDSQLYARL  AGSILYPNPA  YRAESAVLSK  NNRGQSGLWS1980
YAISGDLPIV  LIQIHAQENL  DIVRQMIQAH  AYWHMKGLKV  DLVIWNEDFA  GYRQVLQEQI2040
MGLISSTHLA  NEQNEPGGIF  VRLAEQISPE  DRILISSVAR  IIISDMNGPL  ALQIKRSERK2100
ERRKLLPLHT  TRPYVPSATS  KLTFSNRLLN  NGLGGYSDNG  KEYIIHLSEN  ASTPAPWVNV2160
LANATFGTIV  SESGQSYTWD  INAHEFRLTP  WENDPVSDMS  GEAFYLRDEE  TGHYWSPTPL2220
PCRGSGEYLC  RHGFGYSVFE  HIEDGIHSEL  WIYVALDNNI  KYSVLKVKNH  SGATRSLSAT2280
GYVEWVMGEL  REKTQMSVVT  EIDPISGAIF  ARNPYNTEFA  DRIAFFTVNT  PNRTVTGNRT2340
EFIGRNNSLK  NPAAMSRTHL  SNRVGAGYDP  CGAIHVPFTL  ASGQEKEIQF  MLGTAGRRSA2400
DASQYIHRYR  SAEASELALH  QVRRYWEQTL  SAVRVHTPET  SLNMLANGWL  MYQTIACRLW2460
ARSGFYQSGG  AFGFRDQLQD  AMAVVHTEPS  LLRNQILLCC  EHQFVEGDVQ  HWWHPPGNRG2520
VRTRCSDDYL  WLPLAVCRYV  TTTGDTGILD  ETRYFIEGRP  VPEGEESYYD  LPQRSPEIGT2580
VYEHCVRSIR  HGLRFGSHGL  PLMGSGDWND  GMDKVGIGGK  GESVWLAFFL  YTVLNEFALI2640
AERRDDTAIV  ENCRQQAKAL  QLHIENNAWD  GEWYRRAYFD  DGTPLGSRIN  EECTTDSISQ2700
SWSVLSGAGE  KERTVQAMRA  LNERLVRRDQ  KLIQLLDPPF  DKSDLNPGYI  KGYVPGVREN2760
GGQYTHAAIW  AAMAFAKMGN  ADLAWELFRL  INPVNHSLTP  AETELYKVEP  YVVTADVYAV2820
SPHTGRGGWS  WYTGSSGWMY  RLILESLLGI  RLENGRLAFA  PCLPSDWTSV  DILYRYKETP2880
YHIIIEQQPG  KTETEVLLDN  AVQPGVWIPL  EDDRKEHRVH  VKTGTAKDAA  KPLPE2935

Enzyme Prediction      help

EC 2.4.1.-

CAZyme Signature Domains help

Created with Snap146293440587733880102711741320146716141761190720542201234824942641278818392921GH9413851599GT84
Family Start End Evalue family coverage
GH94 1839 2921 0 0.9980694980694981
GT84 1385 1599 2.2e-103 0.9953488372093023

CDD Domains      download full data without filtering help

Created with Snap146293440587733880102711741320146716141761190720542201234824942641278818392926COG345915911925GH94N_ChvB_NdvB_2_like21312410GH94N_ChvB_NdvB_1_like24252851Glyco_hydro_3621542393Glyco_transf_36
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3459 COG3459 0.0 1839 2926 2 1056
Cellobiose phosphorylase [Carbohydrate transport and metabolism].
cd11753 GH94N_ChvB_NdvB_2_like 2.54e-168 1591 1925 1 336
Second GH94N domain of cyclic beta 1-2 glucan synthetase and similar domains. The glycoside hydrolase family 94 (previously known as glycosyltransferase family 36) includes cyclic beta 1-2 glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the chromosomal chvB virulence gene). This second of two tandemly repeated GH94-N-terminal-like domains has not been characterized functionally. Some beta 1-2 glucan synthetases are annotated as NdvB (nodule development B) gene products, glycosyltransferases required for the synthesis of cyclic beta-(1,2)-glucans, which play a role in interactions between bacteria and plants.
cd11756 GH94N_ChvB_NdvB_1_like 4.19e-155 2131 2410 6 284
First GH94N domain of cyclic beta 1-2 glucan synthetase and similar domains. The glycoside hydrolase family 94 (previously known as glycosyltransferase family 36) includes cyclic beta 1-2 glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the chromosomal chvB virulence gene). This first of two tandemly repeated GH94-N-terminal-like domains has not been characterized functionally. Some beta 1-2 glucan synthetases are annotated as NdvB (nodule development B) gene products, glycosyltransferases required for the synthesis of cyclic beta-(1,2)-glucans, which play a role in interactions between bacteria and plants.
pfam17167 Glyco_hydro_36 1.14e-131 2425 2851 1 425
Glycosyl hydrolase 36 superfamily, catalytic domain. This is the catalytic region of the superfamily of enzymes referred to as GH36. UniProtKB:Q76IQ9 is a chitobiose phosphorylase that catalyzes the reversible phosphorolysis of chitobiose into alpha-GlcNAc-1-phosphate and GlcNAc with inversion of the anomeric configuration. The full-length enzyme comprises a beta sandwich domain and an (alpha/alpha)(6) barrel domain. The alpha-helical barrel component of the domain, this family, is the catalytic region.
pfam06165 Glyco_transf_36 1.68e-108 2154 2393 1 247
Glycosyltransferase family 36. The glycosyltransferase family 36 includes cellobiose phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase (EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-). Many members of this family contain two copies of this domain.

CAZyme Hits      help

Created with Snap146293440587733880102711741320146716141761190720542201234824942641278812933ARQ46761.1|GH0|GH94|GT8412933QDX32599.1|GH0|GH94|GT8412933ARQ78825.1|GH0|GH94|GT84332921AEK61548.1|GH0|GH94|GT84132932AMP15362.1|GH0|GH94|GT84
Hit ID E-Value Query Start Query End Hit Start Hit End
ARQ46761.1 0.0 1 2933 1 2934
QDX32599.1 0.0 1 2933 1 2934
ARQ78825.1 0.0 1 2933 1 2934
AEK61548.1 0.0 33 2921 39 2928
AMP15362.1 0.0 13 2932 16 2930

PDB Hits      download full data without filtering help

Created with Snap1462934405877338801027117413201467161417611907205422012348249426412788213528861V7V_A213429243QDE_A213429213S4C_A213429213RRS_A213429212CQS_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
1V7V_A 3.48e-89 2135 2886 4 762
Crystalstructure of Vibrio proteolyticus chitobiose phosphorylase [Vibrio proteolyticus],1V7W_A Crystal structure of Vibrio proteolyticus chitobiose phosphorylase in complex with GlcNAc [Vibrio proteolyticus],1V7X_A Crystal structure of Vibrio proteolyticus chitobiose phosphorylase in complex with GlcNAc and sulfate [Vibrio proteolyticus]
3QDE_A 1.53e-86 2134 2924 4 811
ChainA, Cellobiose phosphorylase [Acetivibrio thermocellus],3QDE_B Chain B, Cellobiose phosphorylase [Acetivibrio thermocellus]
3S4C_A 4.56e-83 2134 2921 4 820
Lactosephosphorylase in complex with sulfate [Cellulomonas uda],3S4D_A Lactose phosphorylase in a ternary complex with cellobiose and sulfate [Cellulomonas uda]
3RRS_A 2.73e-82 2134 2921 4 820
Crystalstructure analysis of cellobiose phosphorylase from Cellulomonas uda [Cellulomonas uda],3RRS_B Crystal structure analysis of cellobiose phosphorylase from Cellulomonas uda [Cellulomonas uda],3RSY_A Cellobiose phosphorylase from Cellulomonas uda in complex with sulfate and glycerol [Cellulomonas uda],3RSY_B Cellobiose phosphorylase from Cellulomonas uda in complex with sulfate and glycerol [Cellulomonas uda],3S4A_A Cellobiose phosphorylase from Cellulomonas uda in complex with cellobiose [Cellulomonas uda],3S4A_B Cellobiose phosphorylase from Cellulomonas uda in complex with cellobiose [Cellulomonas uda],3S4B_A Cellobiose phosphorylase from Cellulomonas uda in complex with glucose [Cellulomonas uda],3S4B_B Cellobiose phosphorylase from Cellulomonas uda in complex with glucose [Cellulomonas uda]
2CQS_A 3.24e-81 2134 2921 24 840
CrystalStructure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate [Cellulomonas gilvus],2CQS_B Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate [Cellulomonas gilvus],2CQT_A Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Sodium/Potassium Phosphate [Cellulomonas gilvus],2CQT_B Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Sodium/Potassium Phosphate [Cellulomonas gilvus],3QFY_A Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Sulfate and Isofagomine [Cellulomonas gilvus],3QFY_B Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Sulfate and Isofagomine [Cellulomonas gilvus],3QFZ_A Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Sulfate and 1-Deoxynojirimycin [Cellulomonas gilvus],3QFZ_B Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Sulfate and 1-Deoxynojirimycin [Cellulomonas gilvus],3QG0_A Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Phosphate and 1-Deoxynojirimycin [Cellulomonas gilvus],3QG0_B Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Complexed with Phosphate and 1-Deoxynojirimycin [Cellulomonas gilvus]

Swiss-Prot Hits      download full data without filtering help

Created with Snap1462934405877338801027117413201467161417611907205422012348249426412788352902sp|P20471|NDVB_RHIME21352924sp|Q76IQ9|CHBP_VIBPR21342924sp|B9K7M6|CBPA_THENN21352890sp|Q9F8X1|CHBP_VIBFU22012894sp|Q7S0S2|CELAP_NEUCR
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P20471 0.0 35 2902 23 2822
Cyclic beta-(1,2)-glucan synthase NdvB OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ndvB PE=1 SV=2
Q76IQ9 9.19e-89 2135 2924 4 801
N,N'-diacetylchitobiose phosphorylase OS=Vibrio proteolyticus OX=671 GN=chbP PE=1 SV=1
B9K7M6 1.19e-88 2134 2924 4 813
Cellobiose phosphorylase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NBRC 107923 / NS-E) OX=309803 GN=cbpA PE=1 SV=1
Q9F8X1 1.64e-88 2135 2890 4 766
N,N'-diacetylchitobiose phosphorylase OS=Vibrio furnissii OX=29494 GN=chbP PE=1 SV=1
Q7S0S2 7.95e-53 2201 2894 84 762
Cellobionic acid phosphorylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=NCU09425 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000047 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

start end
426 448
455 477
856 878
985 1004