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CAZyme Information: MGYG000000003_00164

You are here: Home > Sequence: MGYG000000003_00164

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Alistipes shahii
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes shahii
CAZyme ID MGYG000000003_00164
CAZy Family GT19
CAZyme Description Lipid-A-disaccharide synthase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
379 43080.77 9.7952
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000003 3229518 Isolate United Kingdom Europe
Gene Location Start: 168885;  End: 170024  Strand: +

Full Sequence      Download help

MKYYLIAGEP  SGDLHGANLI  RGLQKADPGA  EFRFWGGDCM  AAAGGAENLR  KHYRETSFFG60
IVQVLKNLGT  IRRQMRECQA  DVAEFAPDVL  ILVDYPGFNM  KMARWAKEHG  IRTFYYIAPK120
VWAWREWRVK  AIRRYVDRLF  IIFPFERTYF  PKHGITPVFE  GNPLVDAIEA  RRTTLPTPEE180
FRRRNSLDQR  PIVALLAGSR  RNEIRDNLPL  MAALSRKFPE  RQFVVAGVAW  LDRALYEQYT240
AGSDIRYVCD  QTYETLAAAE  AAVVTSGTAT  LETALLGIPE  VVVYRTVWWQ  VWLRPYVLKV300
PWVSLVNLNL  GREAVAEIIQ  SDFSVDRAER  ELRAILHGGS  KRGKMLADFG  ELKTIIGGPG360
ASERFAARMV  AELHAQKIK379

Enzyme Prediction      help

No EC number prediction in MGYG000000003_00164.

CAZyme Signature Domains help

Created with Snap18375675941131321511701892082272462652843033223413604354GT19
Family Start End Evalue family coverage
GT19 4 354 7.6e-107 0.9830508474576272

CDD Domains      download full data without filtering help

Created with Snap18375675941131321511701892082272462652843033223413601373lpxB1373LpxB4320LpxB5373lpxB1342PRK14089
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK00025 lpxB 4.60e-106 1 373 2 374
lipid-A-disaccharide synthase; Reviewed
COG0763 LpxB 2.61e-98 1 373 2 379
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
pfam02684 LpxB 4.30e-68 4 320 2 323
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
TIGR00215 lpxB 2.94e-64 5 373 10 385
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK14089 PRK14089 2.66e-52 1 342 2 339
lipid-A-disaccharide synthase.

CAZyme Hits      help

Created with Snap18375675941131321511701892082272462652843033223413601379BBL11605.1|GT191379BBL08813.1|GT191379BBL00808.1|GT191379AFL77950.1|GT191373BBL06737.1|GT19
Hit ID E-Value Query Start Query End Hit Start Hit End
BBL11605.1 2.98e-237 1 379 1 379
BBL08813.1 2.98e-237 1 379 1 379
BBL00808.1 4.23e-237 1 379 1 379
AFL77950.1 4.93e-236 1 379 1 379
BBL06737.1 1.37e-226 1 373 1 373

PDB Hits      download full data without filtering help

Created with Snap183756759411313215117018920822724626528430332234136053525W8N_A53525W8S_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5W8N_A 2.56e-39 5 352 11 361
LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]
5W8S_A 2.56e-39 5 352 11 361
LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Created with Snap18375675941131321511701892082272462652843033223413605366sp|Q2LVL8|LPXB_SYNAS2376sp|Q74AT9|LPXB_GEOSL2373sp|Q1D393|LPXB_MYXXD5378sp|Q3JAC1|LPXB_NITOC2377sp|Q39T49|LPXB_GEOMG
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q2LVL8 8.13e-65 5 366 8 371
Lipid-A-disaccharide synthase OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=lpxB PE=3 SV=1
Q74AT9 3.59e-63 2 376 8 383
Lipid-A-disaccharide synthase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=lpxB PE=3 SV=1
Q1D393 2.11e-61 2 373 6 377
Lipid-A-disaccharide synthase OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=lpxB PE=3 SV=1
Q3JAC1 5.92e-58 5 378 10 383
Lipid-A-disaccharide synthase OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=lpxB PE=3 SV=1
Q39T49 3.01e-57 2 377 8 383
Lipid-A-disaccharide synthase OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000063 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000003_00164.