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CAZyme Information: MGYG000002536_00439

You are here: Home > Sequence: MGYG000002536_00439

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Plesiomonas shigelloides
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Plesiomonas; Plesiomonas shigelloides
CAZyme ID MGYG000002536_00439
CAZy Family GT19
CAZyme Description Lipid-A-disaccharide synthase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
390 43297.7 8.4884
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002536 3653255 Isolate not provided not provided
Gene Location Start: 110468;  End: 111640  Strand: +

Full Sequence      Download help

MQPEQTSLPV  TQPLVIGIVA  GETSGDILGA  GLIRALRAQH  PDARFVGIAG  PRMQAEGCES60
WFDMEELAVM  GLVEVLKHLP  RLLTIRRTLV  QNFTRLKPDV  FIGIDAPDFN  IGLELKLKQH120
GIKTVHYVSP  SVWAWRQNRV  FKIAKATDLV  LAFLPFEKAF  YDRFNVPCRF  VGHTMADSMP180
LEADKAGARR  TLGLSEDASV  LAVLPGSRAG  EVAMLAEPFL  QTAQRLQQQR  PELQILVPMV240
NARRREQFLA  LKAEIAPDLR  ITLLDGQARD  AMTAADATLL  ASGTAALECM  LAKSPMVVAY300
RVKPLTYWLA  KKLVKTEFVS  LPNLLAGKKI  VPELIQEDCT  VERLTAKLSM  LLSQDNRCLK360
RMFTELHQKI  RCDADQQAAA  AVLDLIQRDD  390

Enzyme Prediction      help

No EC number prediction in MGYG000002536_00439.

CAZyme Signature Domains help

Created with Snap193958789711713615617519521423425327329231233135137016371GT19
Family Start End Evalue family coverage
GT19 16 371 1.6e-143 0.9943502824858758

CDD Domains      download full data without filtering help

Created with Snap193958789711713615617519521423425327329231233135137013372LpxB13388lpxB16372lpxB16372LpxB18351lpxB
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0763 LpxB 0.0 13 372 1 364
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
PRK00025 lpxB 0.0 13 388 1 377
lipid-A-disaccharide synthase; Reviewed
TIGR00215 lpxB 2.33e-175 16 372 8 371
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
pfam02684 LpxB 1.75e-169 16 372 1 364
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
PRK01021 lpxB 1.86e-55 18 351 231 569
lipid-A-disaccharide synthase; Reviewed

CAZyme Hits      help

Created with Snap19395878971171361561751952142342532732923123313513701390AVQ88268.1|GT191390QOH79255.1|GT191390QWK94058.1|GT191390SBT61941.1|GT191390QWK96638.1|GT19
Hit ID E-Value Query Start Query End Hit Start Hit End
AVQ88268.1 6.57e-274 1 390 1 390
QOH79255.1 1.33e-273 1 390 1 390
QWK94058.1 1.33e-273 1 390 1 390
SBT61941.1 2.68e-273 1 390 1 390
QWK96638.1 8.94e-272 1 390 1 390

PDB Hits      download full data without filtering help

Created with Snap1939587897117136156175195214234253273292312331351370123875W8N_A123875W8S_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5W8N_A 2.52e-173 12 387 5 382
LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]
5W8S_A 2.06e-172 12 387 5 382
LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Created with Snap193958789711713615617519521423425327329231233135137011386sp|Q6D8D0|LPXB_PECAS11386sp|C6DAJ6|LPXB_PECCP12385sp|A8GID3|LPXB_SERP512387sp|B7NIE4|LPXB_ECO7I12387sp|B7UJ83|LPXB_ECO27
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q6D8D0 4.65e-183 11 386 3 380
Lipid-A-disaccharide synthase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=lpxB PE=3 SV=1
C6DAJ6 2.67e-182 11 386 3 380
Lipid-A-disaccharide synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=lpxB PE=3 SV=1
A8GID3 5.20e-182 12 385 4 379
Lipid-A-disaccharide synthase OS=Serratia proteamaculans (strain 568) OX=399741 GN=lpxB PE=3 SV=1
B7NIE4 4.92e-180 12 387 5 382
Lipid-A-disaccharide synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=lpxB PE=3 SV=1
B7UJ83 1.41e-179 12 387 5 382
Lipid-A-disaccharide synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000051 0.000003 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002536_00439.