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CAZyme Information: MGYG000004672_00028

You are here: Home > Sequence: MGYG000004672_00028

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species F23-B02 sp004558025
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; F23-B02; F23-B02 sp004558025
CAZyme ID MGYG000004672_00028
CAZy Family GT39
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
582 66096.75 6.492
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004672 1893728 MAG China Asia
Gene Location Start: 28539;  End: 30287  Strand: +

Full Sequence      Download help

MRLTYVFPIL  ILLFIGLFFF  GCPSPASATL  EDRPKSAFRR  RDATALGIIT  LVYAVAAFVG60
LGDMDAPQSF  HEFHSGESVT  IDLGQVRDID  SISIYSGLNT  GSYRIELSDD  GESWFDLASF120
EQNYVALFKW  NDVELDELRL  GAARYIRLTA  SGEVRLGEMA  IRCGGELVGE  SSDAPELFDE180
QDTVPNYQHY  TNSTYFDEIY  HARTAFENLE  GIYPYEISHP  PLGKLIIAIG  ISLFGMTPFG240
WRFSGALIGV  LMLPVMYMLL  KRMFSSTRIC  ACATAIFACD  FMHFAQTRIA  TIDSYSVFFI300
LLMYLFMYLY  ITDGRKRDLA  LSGLFFGIGA  ACKWTCFYAG  AGLAVIWLFH  WIRNFELKAF360
LKNCAFCVVF  FIIVPAMIYY  MSYYPYGLAS  GMHGVGMYFT  ADYANLVLDN  QEFMFSYHSG420
VHTEHPYSSR  WWQWVINERP  ILYYLKYFDD  GTRSSFGAFL  NPVLCWGGLA  AIVVCAVFAV480
KRRDNASLFI  VIGYLAQLLP  WVFITRTTFE  YHYFPSSVFL  VLAIARVFKL  MKDNTKGWKF540
NVYGLTGLAC  ALFIAFYPVI  SGVRVNAQLA  TNLLKWLPSW  PF582

Enzyme Prediction      help

No EC number prediction in MGYG000004672_00028.

CAZyme Signature Domains help

Created with Snap295887116145174203232261291320349378407436465494523552190386GT39
Family Start End Evalue family coverage
GT39 190 386 9.7e-56 0.9237668161434978

CDD Domains      download full data without filtering help

Created with Snap295887116145174203232261291320349378407436465494523552414562PMT_4TMC192384PMT1192385PMT218353PMT_2207445COG4346
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam16192 PMT_4TMC 8.05e-22 414 562 10 183
C-terminal four TMM region of protein-O-mannosyltransferase. PMT_4TMC is the C-terminal four membrane-pass region of protein-O-mannosyltransferases and similar enzymes.
COG1928 PMT1 2.27e-19 192 384 46 265
Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones].
pfam02366 PMT 1.30e-16 192 385 19 239
Dolichyl-phosphate-mannose-protein mannosyltransferase. This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins EC:2.4.1.109. These proteins are responsible for O-linked glycosylation of proteins, they catalyze the reaction:- Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to pfam02516 (A Bateman pers. obs.). This family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose lipid A transferase). They catalyze the addition of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety of the lipopolysaccharide. This is a critical modification enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) to resist killing by antimicrobial peptides such as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase are predicted to have 12 trans-membrane regions. The N-terminal portion of these proteins is hypothesized to have a conserved glycosylation activity which is shared between distantly related oligosaccharyltransferases ArnT and PglB families.
pfam13231 PMT_2 5.30e-16 218 353 1 135
Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.
COG4346 COG4346 9.17e-14 207 445 126 331
Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones].

CAZyme Hits      help

Created with Snap29588711614517420323226129132034937840743646549452355240582ANU42918.1|GT3940582QQR07704.1|GT3940582QIA32159.1|GT3934582QBB67038.1|GT3934582ALP95330.1|GT39
Hit ID E-Value Query Start Query End Hit Start Hit End
ANU42918.1 7.82e-169 40 582 63 653
QQR07704.1 7.82e-169 40 582 63 653
QIA32159.1 1.25e-166 40 582 59 649
QBB67038.1 2.68e-154 34 582 68 752
ALP95330.1 5.34e-154 34 582 68 752

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Created with Snap295887116145174203232261291320349378407436465494523552196580sp|P9WN04|PMT_MYCTO196580sp|P9WN05|PMT_MYCTU196580sp|L8F4Z2|PMT_MYCSE217580sp|Q8NRZ6|PMT_CORGL
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P9WN04 1.53e-26 196 580 73 521
Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=pmt PE=3 SV=2
P9WN05 1.53e-26 196 580 73 521
Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=pmt PE=1 SV=2
L8F4Z2 6.91e-24 196 580 67 515
Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Mycolicibacterium smegmatis (strain MKD8) OX=1214915 GN=pmt PE=3 SV=1
Q8NRZ6 2.91e-17 217 580 97 519
Probable dolichyl-phosphate-mannose--protein mannosyltransferase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=pmt PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.026656 0.004098 0.969127 0.000023 0.000016 0.000064

TMHMM  Annotations      download full data without filtering help

start end
5 22
43 62
238 260
289 311
326 348
360 382
458 480
487 504
509 528
541 563