logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000004687_00039

You are here: Home > Sequence: MGYG000004687_00039

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Haemophilus_A parahaemolyticus
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Pasteurellaceae; Haemophilus_A; Haemophilus_A parahaemolyticus
CAZyme ID MGYG000004687_00039
CAZy Family GT51
CAZyme Description Penicillin-binding protein 1A
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
865 95205.51 8.89
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004687 2063107 MAG China Asia
Gene Location Start: 37489;  End: 40086  Strand: -

Full Sequence      Download help

MKIAKIIFSA  LLTLLIVAGL  AGVAAYIHIR  ESLPDVSTLK  TVELQQPMQI  FTSDGKLIGE60
VGEERRIPVK  LEGIPQSLID  AILATEDSRF  YEHKGVDPKG  IMRALYRSSQ  GDTQGASTIT120
QQLARNFFLT  PERNVERKIK  EAILALEIEK  VLTKDEILEL  YLNKIYLGYR  SYGVAAAAKT180
YFGKTLDQLT  LGEVAIIAGL  PKAPSTMNPI  YSVKRATDRR  NVVLGRMLEV  GKITKAQYET240
AKKEEVKSAY  YGATLEFRAD  YVTEMVRQEM  VKRYGEDIAY  NKGFKVYATV  VSDDQKAAQD300
AVRNNLIQYD  RRHGWRGAAK  LWTGKTAWDD  EAIIDYLSKL  PNSEPFTGVV  VTAVNKNSYT360
LMLPSGDKTE  MKKSNATFGK  QIKLNAGDLI  WVSKGKNGEW  VLGQIPEANS  ALVSLNSDNG420
AIEAVVGGFS  FEQSRFNRAT  QSLVQIGSSI  KPFIYAAAMN  KGLSLSSTIS  DDPITITKRG480
QKPWTPKNAD  GRYEGQLRMR  VALGKSKNMV  SIRILQMAGI  NYVAGYLERF  GFKRDQFVAT540
EALALGAASF  TPLEMARAYA  VFDNGGFLIE  PYIIERIEDS  QGNELFKANP  PIACIECNNL600
PLTYAEPEQF  DGVKIHDEEQ  FFRSLKANET  VNVTDTTIDT  AEDATSDNEE  PVLDTVIREN660
GPDLMSNVQN  QAGQTIYAPR  VMKPEIAFLM  RSALNSAIYG  EQGQSWRGTS  SSLANDFKRK720
DIGGKTGTTN  QSKVTWYAGF  GSNIVTTVYV  GFDDNKRVLG  KGESGARTAM  PAWRDYMKVA780
LADKKDRILP  TPTNIVEAKI  DATSGFLGSQ  LTEYFIKGTE  PTKKFVVEKT  ISSENSGNPR840
DAGGGVRLGL  PPKGILSSPS  GAELF865

Enzyme Prediction      help

EC 2.4.1.129

CAZyme Signature Domains help

Created with Snap438612917321625930234638943247551956260564869273577882154227GT51
Family Start End Evalue family coverage
GT51 54 227 4.9e-68 0.9887005649717514

CDD Domains      download full data without filtering help

Created with Snap438612917321625930234638943247551956260564869273577882165783PBP_1a_fam1828MrcA1828mrcA1814MrcB36806PBP_1b
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR02074 PBP_1a_fam 0.0 65 783 1 531
penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
COG5009 MrcA 0.0 1 828 2 771
Membrane carboxypeptidase/penicillin-binding protein [Cell wall/membrane/envelope biogenesis].
PRK11636 mrcA 0.0 1 828 1 835
penicillin-binding protein 1a; Provisional
COG0744 MrcB 1.37e-163 1 814 9 628
Membrane carboxypeptidase (penicillin-binding protein) [Cell wall/membrane/envelope biogenesis].
TIGR02071 PBP_1b 3.53e-107 36 806 114 706
penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]

CAZyme Hits      help

Created with Snap43861291732162593023463894324755195626056486927357788211865QEN11416.1|GT511865QRP12616.1|GT511865AWI51099.1|GT511865AIZ79394.1|GT511865VEE89862.1|GT51
Hit ID E-Value Query Start Query End Hit Start Hit End
QEN11416.1 0.0 1 865 1 865
QRP12616.1 0.0 1 865 1 865
AWI51099.1 0.0 1 865 1 868
AIZ79394.1 0.0 1 865 1 861
VEE89862.1 0.0 1 865 1 861

PDB Hits      download full data without filtering help

Created with Snap4386129173216259302346389432475519562605648692735778821308285U2G_A368054OON_A447813UDF_A348237U4H_A552413NB6_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5U2G_A 0.0 30 828 4 807
2.6Angstrom Resolution Crystal Structure of Penicillin-Binding Protein 1A from Haemophilus influenzae [Haemophilus influenzae Rd KW20],5U2G_B 2.6 Angstrom Resolution Crystal Structure of Penicillin-Binding Protein 1A from Haemophilus influenzae [Haemophilus influenzae Rd KW20]
4OON_A 1.82e-178 36 805 9 747
Crystalstructure of PBP1a in complex with compound 17 ((4Z,8S,11E,14S)-5-(2-amino-1,3-thiazol-4-yl)-14-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-8-formyl-2-methyl-6-oxo-3,10-dioxa-4,7,11-triazatetradeca-4,11-diene-2,12,14-tricarboxylic acid) [Pseudomonas aeruginosa PAO1]
3UDF_A 9.04e-160 44 781 17 716
ChainA, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDF_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDI_A Chain A, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDI_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDX_A Chain A, Penicillin-binding protein 1a [Acinetobacter baumannii],3UDX_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii],3UE0_A Chain A, Penicillin-binding protein 1a [Acinetobacter baumannii],3UE0_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii],3UE1_A Chain A, Penicillin-binding protein 1a [Acinetobacter baumannii],3UE1_B Chain B, Penicillin-binding protein 1a [Acinetobacter baumannii]
7U4H_A 5.88e-61 34 823 6 809
ChainA, Penicillin-binding protein 1A (Pbp1a) [Chlamydia trachomatis D/UW-3/CX],7U4H_B Chain B, Penicillin-binding protein 1A (Pbp1a) [Chlamydia trachomatis D/UW-3/CX]
3NB6_A 6.56e-57 55 241 9 197
Crystalstructure of Aquifex aeolicus peptidoglycan glycosyltransferase in complex with Methylphosphoryl Neryl Moenomycin [Aquifex aeolicus]

Swiss-Prot Hits      download full data without filtering help

Created with Snap43861291732162593023463894324755195626056486927357788211828sp|P31776|PBPA_HAEIN26828sp|P02918|PBPA_ECOLI6837sp|Q9KNU5|PBPA_VIBCH1805sp|Q07806|PBPA_PSEAE11784sp|Q87AW7|PBPA_XYLFT
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P31776 0.0 1 828 1 822
Penicillin-binding protein 1A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=mrcA PE=1 SV=2
P02918 2.06e-253 26 828 26 835
Penicillin-binding protein 1A OS=Escherichia coli (strain K12) OX=83333 GN=mrcA PE=1 SV=1
Q9KNU5 7.54e-225 6 837 8 821
Penicillin-binding protein 1A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=mrcA PE=3 SV=2
Q07806 1.88e-182 1 805 1 774
Penicillin-binding protein 1A OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=mrcA PE=1 SV=2
Q87AW7 4.73e-176 11 784 11 758
Penicillin-binding protein 1A OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=mrcA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.803554 0.185475 0.003980 0.001479 0.000732 0.004788

TMHMM  Annotations      download full data without filtering help

start end
7 29