logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003139_00319

You are here: Home > Sequence: MGYG000003139_00319

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium_G cochlearium
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium_G; Clostridium_G cochlearium
CAZyme ID MGYG000003139_00319
CAZy Family GT84
CAZyme Description Cyclic beta-(1,2)-glucan synthase NdvB
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2825 MGYG000003139_2|CGC1 329479.81 7.1285
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003139 2361241 MAG United States North America
Gene Location Start: 83253;  End: 91730  Strand: +

Full Sequence      Download help

MDYLKFEEEC  PNNTTVFRCK  YKLKNTLDKS  YKDILKGYIY  LNDEFKNRGE  IIPAGDWLLD60
NLYLIEKEYK  NIKNDVREMY  YRNIPNIKSG  YMKCYPRIYY  VAKKIVKQNN  GKLTKENIEK120
YIEDFQKHTV  LTSSELWALP  TMLKIACINS  TSKIVKEMVY  AQKEKNRAKK  LVETLLQNEN180
NENAINGAIR  RDEDFSLYFV  EALIKGIRNN  SIENQTIYNW  INEKLDMEDK  NIKDIILVEH240
KNQAFFKMIL  GNNITSIREV  GIINWNTSFE  KLSKLDYILN  TDPANVYKSM  DFKSKDYYRN300
KIERIAKKTN  LGEGFIARKA  IECAKENVEQ  RDKTYLNHVG  YYIIDNGIGC  LKEKLKHKDI360
GISKIDSLNL  DNKTNYYTWF  IRITTIILSI  LIAYYNLYKN  YTPLWKFIVG  VLILIIPMSE420
IVISILNWIL  NNYLEPDFIP  KIEFKKDIPK  EYSTMVVIPT  LVNSKKRVSE  LMEDLEVYYL480
ANRSENIYYG  ILADFKDSDK  KEEEGEAEIN  KFALEETKRL  NKKYSKNGKN  IFYFFNRYRQ540
FNEKQGVWLG  WERKRGKLEE  FNRLIRGDKE  TSYNVISGDI  KNLYEVKYII  TLDADTQLPM600
GMAKKLIGAM  AHVLNTPYID  YKNKKVLRGY  GLMQPRIGVG  VLSGNKTLFS  KIFSGETGID660
IYTCAVSDIY  QDLFGEGIFT  GKGIYDVDIF  NYMLKDEIPE  NSVLSHDLLE  GSYVRTALVT720
DLELIDGYPA  YYNASCKRLH  RWVRGDWQLL  PWIFKKNSLN  KLSIWKMKDN  LRRSLLTPSI780
VVLIILSLIL  FPKPEMWLSI  AIISFLTPVL  FNISEITNTS  LKDISIIAKL  ENWKMSLIQF840
FLMFSFIPYK  SYVMIDAISR  SLYRMFISKK  NLLEWQTAAD  VEAKSGKSIK  DYIKTMWIGS900
FIAVLVSLIA  FYKSTNLGLL  LFPSCIIWFF  SPCIAYYISK  DIIEDTYELN  KDEKMLLRRF960
SRKIWAYFED  FAEEESNWLA  PDNYQEEPQK  GVAYRTSPTN  IGMGLIACIS  ALDLGYINLK1020
QCIYKVENII  KNMNDLERYE  GHFYNWYDTK  SKKPLNPKYI  STVDSGNLIG  YLWLLENTFY1080
EFLEEPFINI  KDISKGIIDL  LYLSMEEIGE  EKQNYIKSKE  ILDTFEGDVF  SFIKILKELK1140
LESYDCIKGK  ENLYWNTKLY  KTLKIFEEDF  NTIFPWSQLI  EESKLYETLD  NNIIKELSNL1200
ITKCSLQNFE  DAILKIGDYL  KNSKEEYLDK  LNINIQNSKN  EIKNLKDKIV  NIIKNLNSIS1260
DKMNFKMLFD  EGRGLFAIGY  DVEKHCLDNC  YYDLLASEAR  QASFITIAKG  DIPYTHWFNL1320
GRSISAIGRK  KGLVSWSGTM  FEYLMPLLIM  KSYPNTLLKE  TYDFVVESQK  KYGEKKNVPW1380
GISESGFYAF  DVNLNYQYKA  FGVPGIGLKR  GLETELVISP  YSTFMALNVD  YKSAIDNLKR1440
IIDIGAEGRY  GLYEAIDFTK  NRNPKDSNFK  IVKSFMVHHQ  GMSFMALNNI  LNNFILQRRF1500
HRDNRVKSVE  LLLQEKIPKT  VVYKREEHYN  DNISIKERNV  SMVRKFGIEK  HRLPQCHFLS1560
NGNYDLMITN  RGSGYSKRDN  IFINRWREDI  TDDNLGMFVY  VKDIKSGVYW  SNFYQPCKKE1620
TKNYEVSFSV  DKAKFERADG  EIKTTTEICV  SNEENGEIRK  VTIDNNSGED  KILEITSYFE1680
VVLNKYDADL  VHPSFSNLFI  NTEFIEEPLC  ILANRRKRSV  EDKELWIMQS  LITDENICGN1740
VQYETSRANF  IGRCRDLNRP  EAIENDRIMS  NTVGAVLDPI  ISMRVRVKIP  AKQSCQLSYV1800
IAICENRQQC  IEIADKYQQR  DNVERVFQLA  WTYSQIESRY  LGIKSYMVNK  FQELASNIIF1860
PNESIKQREQ  YVKNIRKNQV  DLWKYGISGD  IPIACIVIDK  LEDIGCIKDI  IKAHEYWNVK1920
GLEVDLIIIN  LEEYSYEQEL  QISIKNIIFA  SHLRYKEYTS  GGVFLYNKST  MLKEDIDFII1980
SISRLVIYCE  DERVLNEPKK  NKKLIDKNKK  INEIKNLKYN  EGDFQFETPE  LEYFNGFGGF2040
KKASYEYIII  LDNYKNTPAP  WINVISNGKF  GFHISENGVS  YTWYKNSREN  KLTPWSNDWV2100
KDNQGEFIYL  KDEETYDIWS  ISPKPKRNSG  KYIIEHGFGY  STYRNKSFGI  VGEMTSFVPL2160
EDNVKVILVN  LKNNTDIKRE  ISVTYYAQLT  LGVVSQHTSR  YISTYKNDDY  DYIYAKNPYN2220
TYFGDLIAYC  KVIGGEQISY  TGDRMEFIGV  DGSLENPNGL  KNDMLSNTLG  SGMDPCIAIN2280
EKVILNPGEE  KTVFILLGQE  DNIEKIDSVI  EKYENEESVL  NELKRVKSYW  EDTLTQIQIE2340
TPDKSMDIMV  NKWLLYQVIS  CRFWARTGFY  QSGGAYGFRD  QLQDSISISY  VRPELTREHI2400
LYSASRQFLE  GDVQHWWHPV  VDSGIRTRFS  DDLLWLPYVT  IQYIKNTGDY  EILNESINYL2460
EDELLKEGED  ERYTISKVSQ  NKGSLYEHCI  KAIDKSLKFG  ENNIPLMGSG  DWNDGMSTVG2520
NKGKGESVWL  GWFIYNILKE  FTSICNKKQD  YEKEEYYNKM  KRFIVDNIEK  NAWDGKWYRR2580
AYFDDGKVLG  SAENEECQID  SLAQSWAVIS  EGGNKSRAEK  AMLSAEERLV  KYDKAIVKLL2640
TPAFNKSDLE  PGYIKGYVPG  VRENGGQYTH  AAIWYILALA  KLGYGEKAWK  IFNMINPINH2700
TLSNLNCNIY  KVEPYVMTAD  VYTVEPNVGR  GGWSWYTGAA  GWMYTTALNG  ILGFNIHSDK2760
GFSITPNIPS  HWNEFKIVYK  KNNCKYNIKV  ERQGKEEVYL  NNELIKDKII  PLFNQGEYEV2820
KIFIK2825

Enzyme Prediction      help

EC 2.4.1.-

CAZyme Signature Domains help

Created with Snap14128242356570684798811301271141215531695183619772118226024012542268317422818GH9412911503GT84
Family Start End Evalue family coverage
GH94 1742 2818 0 0.9942084942084942
GT84 1291 1503 1.8e-104 0.986046511627907

CDD Domains      download full data without filtering help

Created with Snap14128242356570684798811301271141215531695183619772118226024012542268317422825COG345914961829GH94N_ChvB_NdvB_2_like23292753Glyco_hydro_3620302313GH94N_ChvB_NdvB_1_like20582298Glyco_transf_36
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3459 COG3459 0.0 1742 2825 1 1053
Cellobiose phosphorylase [Carbohydrate transport and metabolism].
cd11753 GH94N_ChvB_NdvB_2_like 1.10e-162 1496 1829 1 336
Second GH94N domain of cyclic beta 1-2 glucan synthetase and similar domains. The glycoside hydrolase family 94 (previously known as glycosyltransferase family 36) includes cyclic beta 1-2 glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the chromosomal chvB virulence gene). This second of two tandemly repeated GH94-N-terminal-like domains has not been characterized functionally. Some beta 1-2 glucan synthetases are annotated as NdvB (nodule development B) gene products, glycosyltransferases required for the synthesis of cyclic beta-(1,2)-glucans, which play a role in interactions between bacteria and plants.
pfam17167 Glyco_hydro_36 8.97e-156 2329 2753 1 423
Glycosyl hydrolase 36 superfamily, catalytic domain. This is the catalytic region of the superfamily of enzymes referred to as GH36. UniProtKB:Q76IQ9 is a chitobiose phosphorylase that catalyzes the reversible phosphorolysis of chitobiose into alpha-GlcNAc-1-phosphate and GlcNAc with inversion of the anomeric configuration. The full-length enzyme comprises a beta sandwich domain and an (alpha/alpha)(6) barrel domain. The alpha-helical barrel component of the domain, this family, is the catalytic region.
cd11756 GH94N_ChvB_NdvB_1_like 9.32e-143 2030 2313 1 283
First GH94N domain of cyclic beta 1-2 glucan synthetase and similar domains. The glycoside hydrolase family 94 (previously known as glycosyltransferase family 36) includes cyclic beta 1-2 glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the chromosomal chvB virulence gene). This first of two tandemly repeated GH94-N-terminal-like domains has not been characterized functionally. Some beta 1-2 glucan synthetases are annotated as NdvB (nodule development B) gene products, glycosyltransferases required for the synthesis of cyclic beta-(1,2)-glucans, which play a role in interactions between bacteria and plants.
pfam06165 Glyco_transf_36 5.25e-97 2058 2298 1 247
Glycosyltransferase family 36. The glycosyltransferase family 36 includes cellobiose phosphorylase (EC:2.4.1.20), cellodextrin phosphorylase (EC:2.4.1.49), chitobiose phosphorylase (EC:2.4.1.-). Many members of this family contain two copies of this domain.

CAZyme Hits      help

Created with Snap14128242356570684798811301271141215531695183619772118226024012542268312825SNV88157.1|GH0|GH94|GT8412825AAO36920.1|GH0|GH94|GT8412825AVP54577.1|GH0|GH94|GT846332825CDI50658.1|GH94|GT846332825QBD85765.1|GH94|GT84
Hit ID E-Value Query Start Query End Hit Start Hit End
SNV88157.1 0.0 1 2825 1 2825
AAO36920.1 0.0 1 2825 14 2838
AVP54577.1 0.0 1 2825 14 2841
CDI50658.1 0.0 633 2825 1 2193
QBD85765.1 0.0 633 2825 1 2193

PDB Hits      download full data without filtering help

Created with Snap141282423565706847988113012711412155316951836197721182260240125422683203728173QDE_A203728201V7V_A203727943S4C_A203727943RRS_A203727943AFJ_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3QDE_A 4.38e-87 2037 2817 3 802
ChainA, Cellobiose phosphorylase [Acetivibrio thermocellus],3QDE_B Chain B, Cellobiose phosphorylase [Acetivibrio thermocellus]
1V7V_A 4.43e-86 2037 2820 3 796
Crystalstructure of Vibrio proteolyticus chitobiose phosphorylase [Vibrio proteolyticus],1V7W_A Crystal structure of Vibrio proteolyticus chitobiose phosphorylase in complex with GlcNAc [Vibrio proteolyticus],1V7X_A Crystal structure of Vibrio proteolyticus chitobiose phosphorylase in complex with GlcNAc and sulfate [Vibrio proteolyticus]
3S4C_A 2.40e-66 2037 2794 3 787
Lactosephosphorylase in complex with sulfate [Cellulomonas uda],3S4D_A Lactose phosphorylase in a ternary complex with cellobiose and sulfate [Cellulomonas uda]
3RRS_A 3.38e-65 2037 2794 3 787
Crystalstructure analysis of cellobiose phosphorylase from Cellulomonas uda [Cellulomonas uda],3RRS_B Crystal structure analysis of cellobiose phosphorylase from Cellulomonas uda [Cellulomonas uda],3RSY_A Cellobiose phosphorylase from Cellulomonas uda in complex with sulfate and glycerol [Cellulomonas uda],3RSY_B Cellobiose phosphorylase from Cellulomonas uda in complex with sulfate and glycerol [Cellulomonas uda],3S4A_A Cellobiose phosphorylase from Cellulomonas uda in complex with cellobiose [Cellulomonas uda],3S4A_B Cellobiose phosphorylase from Cellulomonas uda in complex with cellobiose [Cellulomonas uda],3S4B_A Cellobiose phosphorylase from Cellulomonas uda in complex with glucose [Cellulomonas uda],3S4B_B Cellobiose phosphorylase from Cellulomonas uda in complex with glucose [Cellulomonas uda]
3AFJ_A 3.68e-63 2037 2794 23 807
CrystalStructure of Cellvibrio gilvus Cellobiose Phosphorylase triple mutant [Cellulomonas gilvus ATCC 13127],3AFJ_B Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase triple mutant [Cellulomonas gilvus ATCC 13127]

Swiss-Prot Hits      download full data without filtering help

Created with Snap141282423565706847988113012711412155316951836197721182260240125422683322807sp|P20471|NDVB_RHIME20372805sp|Q9F8X1|CHBP_VIBFU20372817sp|B9K7M6|CBPA_THENN20372822sp|Q76IQ9|CHBP_VIBPR21052811sp|Q7S0S2|CELAP_NEUCR
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P20471 0.0 32 2807 67 2825
Cyclic beta-(1,2)-glucan synthase NdvB OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ndvB PE=1 SV=2
Q9F8X1 6.98e-91 2037 2805 3 781
N,N'-diacetylchitobiose phosphorylase OS=Vibrio furnissii OX=29494 GN=chbP PE=1 SV=1
B9K7M6 2.50e-86 2037 2817 3 804
Cellobiose phosphorylase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NBRC 107923 / NS-E) OX=309803 GN=cbpA PE=1 SV=1
Q76IQ9 1.58e-85 2037 2822 3 798
N,N'-diacetylchitobiose phosphorylase OS=Vibrio proteolyticus OX=671 GN=chbP PE=1 SV=1
Q7S0S2 9.90e-54 2105 2811 84 771
Cellobionic acid phosphorylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=NCU09425 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000068 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

start end
379 398
408 430
775 792
797 816
837 859
895 912
917 939