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CAZyme Information: MGYG000000564_00479

You are here: Home > Sequence: MGYG000000564_00479

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Duodenibacillus sp900552915
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Duodenibacillus; Duodenibacillus sp900552915
CAZyme ID MGYG000000564_00479
CAZy Family GT9
CAZyme Description ADP-heptose--LPS heptosyltransferase 2
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
310 MGYG000000564_11|CGC1 33825.43 9.1934
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000564 1924234 MAG China Asia
Gene Location Start: 19784;  End: 20716  Strand: -

Full Sequence      Download help

MPVVLCRLPN  HVGDCCMCLP  ALRLLAASGY  TPALIGKRWA  EDLMAGMGWR  FDPIEGHISE60
DLSRIRYLAH  NAGATQGLLF  PNSFGSALLF  KLGRLKTTGL  KTDMRSLLLN  FGIPEPGPMH120
EVERFFYVVH  EAIKAWGGTP  AFDKVPERLS  LVLFKRHEAA  AKNLIEQYNI  PAKFALLAPI180
ARGKHHGKAK  HWEHFNELVA  PLREKGMEPI  VFPSVREEAL  AKAACPDATI  LPPTTLGNFA240
ALAKRAQIVI  ANDSGVSHIA  AAVGAKQITL  VGVTDTKRTG  PWNPDAIVLG  ENGRWPEVSE300
VLQAINSTLK  310

Enzyme Prediction      help

No EC number prediction in MGYG000000564_00479.

CAZyme Signature Domains help

Created with Snap15314662779310812413915517018620121723224826327929479289GT9
Family Start End Evalue family coverage
GT9 79 289 2.4e-29 0.8222222222222222

CDD Domains      download full data without filtering help

Created with Snap15314662779310812413915517018620121723224826327929473301Glyco_transf_91288RfaF4290GT9_LPS_heptosyltransferase9281heptsyl_trn_II120287PRK10422
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01075 Glyco_transf_9 1.01e-34 73 301 12 240
Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
COG0859 RfaF 3.10e-24 1 288 1 294
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
cd03789 GT9_LPS_heptosyltransferase 2.92e-20 4 290 2 241
lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
TIGR02195 heptsyl_trn_II 2.18e-12 9 281 7 287
lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK10422 PRK10422 3.94e-08 120 287 139 304
lipopolysaccharide core biosynthesis protein; Provisional

CAZyme Hits      help

Created with Snap1531466277931081241391551701862012172322482632792941305QDA55160.1|GT94305QQS89241.1|GT94309BBF22597.1|GT97309ANU65198.1|GT97309QQQ96353.1|GT9
Hit ID E-Value Query Start Query End Hit Start Hit End
QDA55160.1 2.22e-149 1 305 1 306
QQS89241.1 9.18e-143 4 305 6 309
BBF22597.1 1.31e-141 4 309 5 311
ANU65198.1 1.13e-121 7 309 7 309
QQQ96353.1 1.13e-121 7 309 7 309

PDB Hits      download full data without filtering help

Created with Snap15314662779310812413915517018620121723224826327929492891PSW_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
1PSW_A 2.55e-07 9 289 8 305
Structureof E. coli ADP-heptose lps heptosyltransferase II [Escherichia coli]

Swiss-Prot Hits      download full data without filtering help

Created with Snap1531466277931081241391551701862012172322482632792949289sp|P37692|RFAF_ECOLI9289sp|P37421|RFAF_SALTY
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P37692 6.98e-10 9 289 8 305
ADP-heptose--LPS heptosyltransferase 2 OS=Escherichia coli (strain K12) OX=83333 GN=rfaF PE=1 SV=1
P37421 7.34e-09 9 289 8 305
ADP-heptose--LPS heptosyltransferase 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rfaF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000033 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000564_00479.