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CAZyme Information: MGYG000002518_00065

You are here: Home > Sequence: MGYG000002518_00065

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Serratia surfactantfaciens
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Serratia; Serratia surfactantfaciens
CAZyme ID MGYG000002518_00065
CAZy Family GT9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
363 MGYG000002518_1|CGC1 40717.42 8.7592
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002518 5076569 Isolate India Asia
Gene Location Start: 67831;  End: 68922  Strand: -

Full Sequence      Download help

MREKKKFKIG  LCDFFLSLFF  RQAKSTPEKK  NALATMTFDS  ILVYSTTALG  DYMFNSPALR60
AIRLRYPQAH  ITLVAHPKYQ  NLLTQRDFYD  DVLFWTNKVS  DMSALVKQAK  RHKPQLAILL120
HSHLPYDITS  AAMAGCQYIV  RDNYAKPVGK  MARWLTYGLD  DYDEHVIARK  MKLVAALGCA180
TDNVDMALPC  RYEVQPKPEG  TVRVGFQLGA  STLIRCWPPE  YYAALAQRLL  AANERIEIVL240
IGSPQETPLA  EALMKHLDAA  FAGKIVSFVG  KTTLPQLLGV  IASMDLLVTG  DTGPFHLAIS300
LHVPTLSLFV  TEDPRRSGPY  QDRELHQNIY  LPLSDPRVTD  QEAPLRAIAV  DDVYLRVMAM360
LAA363

Enzyme Prediction      help

No EC number prediction in MGYG000002518_00065.

CAZyme Signature Domains help

Created with Snap1836547290108127145163181199217235254272290308326344104331GT9
Family Start End Evalue family coverage
GT9 104 331 8.5e-43 0.8933333333333333

CDD Domains      download full data without filtering help

Created with Snap183654729010812714516318119921723525427229030832634440354GT9_LPS_heptosyltransferase40363RfaF204323Glyco_transf_941361heptsyl_trn_I38323PRK10422
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd03789 GT9_LPS_heptosyltransferase 2.55e-43 40 354 1 272
lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
COG0859 RfaF 7.36e-31 40 363 3 332
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
pfam01075 Glyco_transf_9 3.03e-17 204 323 108 223
Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
TIGR02193 heptsyl_trn_I 2.97e-15 41 361 2 319
lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK10422 PRK10422 1.38e-04 38 323 5 302
lipopolysaccharide core biosynthesis protein; Provisional

CAZyme Hits      help

Created with Snap18365472901081271451631811992172352542722903083263441363BAO36470.1|GT91362AKG68952.1|GT91362CAE1151524.1|GT91361AGB84658.1|GT91361QHA87351.1|GT9
Hit ID E-Value Query Start Query End Hit Start Hit End
BAO36470.1 2.48e-253 1 363 1 363
AKG68952.1 1.95e-211 1 362 1 362
CAE1151524.1 1.88e-202 1 362 1 362
AGB84658.1 3.79e-202 1 361 1 361
QHA87351.1 1.08e-201 1 361 1 361

PDB Hits      download full data without filtering help

Created with Snap1836547290108127145163181199217235254272290308326344363213TOV_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3TOV_A 3.85e-14 36 321 6 299
Thecrystal structure of the glycosyl transferase family 9 from Veillonella parvula DSM 2008 [Veillonella parvula DSM 2008],3TOV_B The crystal structure of the glycosyl transferase family 9 from Veillonella parvula DSM 2008 [Veillonella parvula DSM 2008]

Swiss-Prot Hits      download full data without filtering help

Created with Snap183654729010812714516318119921723525427229030832634440330sp|Q57336|OPSX_HAEIN
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q57336 1.94e-08 40 330 10 302
Lipopolysaccharide core heptosyltransferase OpsX OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=opsX PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.998693 0.001299 0.000028 0.000003 0.000002 0.000004

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002518_00065.