logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002605_00167

You are here: Home > Sequence: MGYG000002605_00167

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA6984 sp003258725
Lineage Bacteria; Cyanobacteria; Vampirovibrionia; Gastranaerophilales; Gastranaerophilaceae; UBA6984; UBA6984 sp003258725
CAZyme ID MGYG000002605_00167
CAZy Family GT9
CAZyme Description Lipopolysaccharide core heptosyltransferase RfaQ
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
330 37192.8 9.5615
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002605 1854240 MAG China Asia
Gene Location Start: 178814;  End: 179806  Strand: +

Full Sequence      Download help

MKNILVINFG  GIGDEILFLP  TLISLKKEFP  KSKITLCLEP  RSKGIKDLTD  TIDEVMLINP60
KGKHKYFEML  KLIIKARLGR  YDMVISAGGN  KLISILLFLT  GIKKRYGYNT  GKLSEKLLTK120
AVPLNKQQYA  SLMYHDLIRD  ITNIRTDVPE  ITLEKGEKVP  NSVLIHPGVS  KLSVQKNMIK180
TITPEIWADV  IKILLENGKH  VTLTGGPDDK  EVVDKILSII  EPLNNPNFEN  YYGKTKNLMD240
LAKLITKYEK  FVCSDSAPLH  IGVGTRTRTY  AIFGSTDDKK  LIPQADFVTA  LKTNDDCPIK300
PCLWDHRQTT  CEKLSCLKFK  AEDITSEILK  330

Enzyme Prediction      help

No EC number prediction in MGYG000002605_00167.

CAZyme Signature Domains help

Created with Snap16334966829911513214816518119821423124726428029731371311GT9
Family Start End Evalue family coverage
GT9 71 311 2.1e-31 0.9466666666666667

CDD Domains      download full data without filtering help

Created with Snap1633496682991151321481651811982142312472642802973131297RfaF3319GT9_LPS_heptosyltransferase69314Glyco_transf_92286PRK10422
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0859 RfaF 7.25e-45 1 297 1 301
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
cd03789 GT9_LPS_heptosyltransferase 5.02e-40 3 319 1 265
lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
pfam01075 Glyco_transf_9 9.31e-17 69 314 1 246
Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
PRK10422 PRK10422 1.36e-15 2 286 6 301
lipopolysaccharide core biosynthesis protein; Provisional

CAZyme Hits      help

Created with Snap1633496682991151321481651811982142312472642802973133329AOR38411.1|GT910293BAU12214.1|GT91291BAC91053.1|GT91284AGY56785.1|GT910293ARV62225.1|GT9
Hit ID E-Value Query Start Query End Hit Start Hit End
AOR38411.1 7.69e-164 3 329 2 327
BAU12214.1 2.59e-50 10 293 9 301
BAC91053.1 1.10e-46 1 291 1 298
AGY56785.1 1.10e-46 1 284 1 291
ARV62225.1 1.74e-46 10 293 9 299

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000044 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002605_00167.