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CAZyme Information: MGYG000003288_00784

You are here: Home > Sequence: MGYG000003288_00784

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Duodenibacillus sp900544255
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Burkholderiales; Burkholderiaceae; Duodenibacillus; Duodenibacillus sp900544255
CAZyme ID MGYG000003288_00784
CAZy Family GT9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
294 MGYG000003288_43|CGC1 32113.3 8.882
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003288 2215926 MAG Mongolia Asia
Gene Location Start: 10328;  End: 11212  Strand: +

Full Sequence      Download help

MCLPALRLLE  ASGYTPALVG  KRWAEDLMAG  MGWRFDPITG  HVSEDLKRIR  YLAQNAGAAK60
GLLFPNSLGS  ALLFKFGQIE  SAGLTTDCRS  LLLSEKIPEP  PKCHEVERFF  HVAHEAIKAW120
GGTPAWDKIP  KNLGLLLLKR  HEAAAKNLME  KYGIPKRYAV  LAPIARGLQD  GQNKCWAHFN180
DLVGPLRNIG  IEPIVFPNKE  EADAARKACP  EASIYEPTSL  GNFAAIVKHA  QFVIANDSGV240
SHIAAALGVK  QITLIGVTDP  VRTSPWNPNA  VLLGEKGRWP  TIEEVLETIK  KFAA294

Enzyme Prediction      help

No EC number prediction in MGYG000003288_00784.

CAZyme Signature Domains help

Created with Snap14294458738810211713214716117619120522023524926427964272GT9
Family Start End Evalue family coverage
GT9 64 272 1.3e-28 0.8133333333333334

CDD Domains      download full data without filtering help

Created with Snap14294458738810211713214716117619120522023524926427961274Glyco_transf_989272RfaF124274GT9_LPS_heptosyltransferase136290PRK10422172260PRK10964
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01075 Glyco_transf_9 3.69e-29 61 274 16 228
Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
COG0859 RfaF 1.53e-20 89 272 115 294
ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
cd03789 GT9_LPS_heptosyltransferase 4.66e-18 124 274 95 241
lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
PRK10422 PRK10422 7.41e-10 136 290 160 325
lipopolysaccharide core biosynthesis protein; Provisional
PRK10964 PRK10964 2.25e-07 172 260 190 284
lipopolysaccharide heptosyltransferase RfaC.

CAZyme Hits      help

Created with Snap1429445873881021171321471611761912052202352492642791294QDA55160.1|GT91291QQS89241.1|GT91285BBF22597.1|GT91289ANU65198.1|GT91289QQQ96353.1|GT9
Hit ID E-Value Query Start Query End Hit Start Hit End
QDA55160.1 2.89e-136 1 294 17 311
QQS89241.1 2.17e-132 1 291 19 311
BBF22597.1 1.54e-131 1 285 18 303
ANU65198.1 8.54e-110 1 289 17 305
QQQ96353.1 8.54e-110 1 289 17 305

PDB Hits      download full data without filtering help

Created with Snap1429445873881021171321471611761912052202352492642791782772GT1_A1782776DFE_A1782772H1F_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
2GT1_A 5.16e-06 178 277 198 301
E.coli heptosyltransferase WaaC. [Escherichia coli UTI89],2GT1_B E. coli heptosyltransferase WaaC. [Escherichia coli UTI89]
6DFE_A 5.16e-06 178 277 198 301
Thestructure of a ternary complex of E. coli WaaC [Escherichia coli],6DFE_B The structure of a ternary complex of E. coli WaaC [Escherichia coli]
2H1F_A 5.27e-06 178 277 198 301
E.coli heptosyltransferase WaaC with ADP [Escherichia coli O6],2H1F_B E. coli heptosyltransferase WaaC with ADP [Escherichia coli O6],2H1H_A E. coli heptosyltransferase WaaC with ADP-2-deoxy-2-fluoro heptose [Escherichia coli RS218],2H1H_B E. coli heptosyltransferase WaaC with ADP-2-deoxy-2-fluoro heptose [Escherichia coli RS218]

Swiss-Prot Hits      download full data without filtering help

Created with Snap14294458738810211713214716117619120522023524926427962273sp|P45042|RFAF_HAEIN
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P45042 2.92e-06 62 273 84 305
ADP-heptose--LPS heptosyltransferase 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rfaF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000059 0.000002 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003288_00784.