CAZyme Information: MGYG000003803_00134

Basic Information

• Species: Pantoea conspicua
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Pantoea; Pantoea conspicua
• CAZyme ID: MGYG000003803_00134
• CAZy Family: GT9
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
358		40721.23	8.5501

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003803	3817683	MAG	Canada	North America

• Gene Location: Start: 3558; End: 4634 Strand: +

Full Sequence      

MNYVLIYLLLVPFRTLMRLFYRPTGRNLIIQTAKIGDFINITPMLRALGQSELLISKAVE
PLVRHDDTVSRYFLIEEAKRSFFAKLKLAFTLMNRYDNVYLVQPNSVNLFFASLCNAPNK
QFLRTYVRKSYHAVFYRRASGIVDHAKTDLTLDSYLKLINREYRYTDFPKHATSPLWQPP
APPAALLTPREGIKIGISISAGNRAKTIPASVWRQLMEALADLPCTFYVFGPPAEQPWLD
ELLSLTGPKENIVSLIGELKLEEVPWAIAQMDFYISSDSGNAYIADAQQIPLIVLYGPCD
IREQRPVHNALFIGPDNIAATSFIFAAPYAFDQPAEKLFGLDHDKLTRIQTFITHNLE

Enzyme Prediction     

No EC number prediction in MGYG000003803_00134.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GT9	87	308	5.6e-25	0.8577777777777778

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd03789	GT9_LPS_heptosyltransferase	8.77e-28	26	306	1	232	lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
COG0859	RfaF	6.92e-22	28	313	5	294	ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
pfam01075	Glyco_transf_9	6.62e-14	94	307	11	220	Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
TIGR02195	heptsyl_trn_II	8.44e-04	205	300	188	281	lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK10916	PRK10916	0.005	249	298	240	289	ADP-heptose--LPS heptosyltransferase RfaF.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QIA53120.1	9.54e-244	1	358	1	358
AYP21571.1	1.93e-243	1	358	1	358
AOE39518.1	5.52e-243	1	358	1	358
QAV51181.1	3.19e-242	1	358	1	358
QAV46339.1	3.19e-242	1	358	1	358

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.997198	0.002512	0.000257	0.000014	0.000006	0.000021

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003803_00134.