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CAZyme Information: MGYG000000227_00452

You are here: Home > Sequence: MGYG000000227_00452

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bacillus sonorensis
Lineage Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus sonorensis
CAZyme ID MGYG000000227_00452
CAZy Family PL1
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
430 MGYG000000227_1|CGC2 48140.23 5.0546
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000227 4782975 Isolate China Asia
Gene Location Start: 444464;  End: 445756  Strand: -

Full Sequence      Download help

MKKGIGLLLA  LAMMAGSSLP  VQAEDHGREV  LGSKDGWGAY  GEGTTGGADA  SSDHVYTVQN60
RQQLVEALGG  KNSANGLNDT  PKIIYIKGTI  DLNVDDENKP  LGFDDYKDPE  YSLEKYLAAY120
SPDKWGKKEP  SGKLEDARAR  SEKNQKERVI  LNVGSNTTII  GLGDDAKILG  GGFYIKQAKN180
VIIRNIEFEN  AYDYFPAWDP  TDGSEGNWNS  EFDNLLLESS  EHVWVDHCSF  NDGSKPDNFD240
DTYFGRVFQH  HDGLLDIKKQ  SDFVTVSYNV  FSGHDKNTIV  GSSDKYSADN  GHLRVTFHHN300
MYENIKERAP  RVRYGKVHLY  NNYFKNTENN  YDYSWGVGYS  SKIYAEDNYF  SLPEGTKPEK360
MMKAFKGDAL  HEEDTLLNDQ  KIDVVSTYNK  AYNASIKKST  GWTPELYEKI  DAAKDVPKIV420
EEQAGAGKLQ  430

Enzyme Prediction      help

EC 4.2.2.2

CAZyme Signature Domains help

Created with Snap21436486107129150172193215236258279301322344365387408141350PL1
Family Start End Evalue family coverage
PL1 141 350 1.5e-98 0.9953051643192489

CDD Domains      download full data without filtering help

Created with Snap214364861071291501721932152362582793013223443653874088430PelB151353Amb_all126350Pec_lyase_C
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.43e-77 8 430 9 345
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 3.60e-62 151 353 12 189
Amb_all domain.
pfam00544 Pec_lyase_C 1.02e-46 126 350 8 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Created with Snap214364861071291501721932152362582793013223443653874081430ASB89955.1|PL1_61430ATH95251.1|PL1_613430QHZ46500.1|PL1_67430QII48641.1|PL1_67430QFY39273.1|PL1_6
Hit ID E-Value Query Start Query End Hit Start Hit End
ASB89955.1 0.0 1 430 1 430
ATH95251.1 1.67e-279 1 430 1 434
QHZ46500.1 4.97e-264 13 430 14 430
QII48641.1 1.49e-257 7 430 8 435
QFY39273.1 1.42e-255 7 430 8 435

PDB Hits      download full data without filtering help

Created with Snap2143648610712915017219321523625827930132234436538740874291BN8_A74292BSP_A254295AMV_A254292NZM_A274291VBL_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
1BN8_A 4.13e-165 7 429 4 419
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 1.18e-164 7 429 4 419
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
5AMV_A 3.25e-164 25 429 2 398
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
2NZM_A 2.64e-163 25 429 2 398
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]
1VBL_A 9.61e-163 27 429 4 415
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]

Swiss-Prot Hits      download full data without filtering help

Created with Snap214364861071291501721932152362582793013223443653874087429sp|P39116|PLY_BACSU1429sp|Q56806|PLY_XANCM17429sp|Q51915|PLY_PSEMA36429sp|Q60140|PLY_PSEVI17429sp|Q59671|PLY_PSEFL
Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 2.26e-164 7 429 4 419
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
Q56806 3.64e-83 1 429 1 377
Pectate lyase OS=Xanthomonas campestris pv. malvacearum OX=86040 PE=3 SV=1
Q51915 1.39e-80 17 429 23 380
Pectate lyase OS=Pseudomonas marginalis OX=298 GN=pel PE=1 SV=1
Q60140 9.54e-78 36 429 39 379
Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1
Q59671 1.90e-77 17 429 23 380
Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000215 0.999101 0.000188 0.000184 0.000155 0.000139

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000227_00452.