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CAZyme Information: MGYG000000967_00060

You are here: Home > Sequence: MGYG000000967_00060

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UMGS1441 sp900543365
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; CAG-274; UMGS1441; UMGS1441 sp900543365
CAZyme ID MGYG000000967_00060
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
826 88316.44 4.5021
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000000967 1698990 MAG Spain Europe
Gene Location Start: 13366;  End: 15846  Strand: +

Full Sequence      Download help

MKKSLKRILS  SVLAATMVVG  TGAFVNEPFS  NYAVENVYAA  SYLTESAGWF  ESAYAEWTAV60
PNATGYAAYV  KGAGEADSAY  KMLDNELVRK  YPTYFRADAV  GLKAGNYVMK  IVPYVNGKAD120
ESLALTTGTL  NVKAYDRSGA  AFSSKSKYKT  GSGAYNDDGT  LKSNAIVVYV  TKDTAKTVQA180
TLNGITYTGF  QDIVYGKQKG  DTTPLDIRII  GTIDADDMDS  FGSSAEGLQV  KGKNSYAEMN240
MTIEGIGEDA  QIKNFGILCR  NAGNVEFRNF  GIMLCMDDSL  SLDTDNANIW  VHNMDLFYGS300
TGGDADQAKG  DGTVDVKGQS  SFVTISYNHF  WDSGKSSLCG  MKSETTDCQI  TYHHNWFDHS360
DSRHPRIRTM  TVHIYNNYFD  GNSKYGVGVT  MGSSAFVENN  YFENCKHPML  SSMQGSDIEQ420
NTFAEDGVTA  TGYKYGTKGT  FSGETGGIIK  SYNNHIEGTQ  KIERTWDSTL  QYEPVFYGAS480
VVDSDTQFDA  YQVTSRNQTV  PSTVKSLSGS  TTYNNFDTDT  SNWDLGVDPA  NITPVEEVPT540
VVKSSAGRMN  GGDFPTDRSQ  FTIINDASNY  SVDTEFKTAM  QNYKSSLVSV  GGLDAGSLPE600
TTTNVEVSTE  TTTKTVEGST  ETTTKIEEGS  TETTTVNPSG  AASMGTYVIG  DGATGGDFNV660
VNNSTYGNIN  FSNVRSVDAG  GAKLRAANEI  TFTLASETEV  SIICGEGKDV  ILTDGTNNYT720
CAANTTTTKT  VPAGSYKIKG  SADSNSLVSK  IVLKSTGTTP  DPDPTPIEVK  GDANGDGKVT780
RADMTMVLDF  ASGKISAVTK  ADLADVSGDG  KVTAYDAYLI  GKIILG826

Enzyme Prediction      help

No EC number prediction in MGYG000000967_00060.

CAZyme Signature Domains help

Created with Snap4182123165206247289330371413454495536578619660702743784236404PL1
Family Start End Evalue family coverage
PL1 236 404 5.9e-45 0.8217821782178217

CDD Domains      download full data without filtering help

Created with Snap4182123165206247289330371413454495536578619660702743784101408PelB240406Amb_all204402Pec_lyase_C770825Dockerin_I771825Dockerin_1
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 2.40e-56 101 408 2 279
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 2.81e-32 240 406 17 190
Amb_all domain.
pfam00544 Pec_lyase_C 2.15e-18 204 402 1 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
cd14256 Dockerin_I 2.37e-11 770 825 1 57
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.
pfam00404 Dockerin_1 1.30e-06 771 825 1 56
Dockerin type I repeat. The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium.

CAZyme Hits      help

Created with Snap41821231652062472893303714134544955365786196607027437843611ACR72247.1|PL1|PL9_17603BCJ94010.1|CBM77|PL146593ACR72246.1|PL1|PL9_11600ACX62589.1|CBM77|PL11602AIQ44647.1|CBM77|PL1
Hit ID E-Value Query Start Query End Hit Start Hit End
ACR72247.1 1.01e-175 3 611 7 593
BCJ94010.1 9.69e-172 7 603 14 577
ACR72246.1 5.49e-168 46 593 48 575
ACX62589.1 2.43e-166 1 600 1 568
AIQ44647.1 5.78e-166 1 602 1 568

PDB Hits      download full data without filtering help

Created with Snap41821231652062472893303714134544955365786196607027437842044043VMV_A1974181AIR_A1974182EWE_A2364021VBL_A2254292QY1_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 1.96e-25 204 404 47 248
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1AIR_A 9.81e-22 197 418 44 273
ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2EWE_A 2.39e-21 197 418 44 273
ChainA, Pectate lyase C [Dickeya chrysanthemi]
1VBL_A 2.98e-20 236 402 129 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
2QY1_A 5.20e-18 225 429 63 276
ChainA, Pectate lyase II [Xanthomonas campestris pv. campestris],2QY1_B Chain B, Pectate lyase II [Xanthomonas campestris pv. campestris]

Swiss-Prot Hits      download full data without filtering help

Created with Snap4182123165206247289330371413454495536578619660702743784188411sp|Q65DC2|PTLY_BACLD188411sp|Q8GCB2|PTLY_BACLI188411sp|B1B6T1|PTLY_BACSP141484sp|P04959|PLYB_DICCH197418sp|P0C1C3|PLY3_PECCC
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q65DC2 5.02e-29 188 411 67 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
Q8GCB2 5.02e-29 188 411 67 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
B1B6T1 5.02e-29 188 411 67 281
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
P04959 2.81e-22 141 484 15 349
Pectate lyase B OS=Dickeya chrysanthemi OX=556 GN=pelB PE=3 SV=1
P0C1C3 3.73e-22 197 418 65 294
Pectate lyase 3 OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pel3 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.002935 0.993976 0.002259 0.000312 0.000238 0.000212

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000000967_00060.